Bioconductor GENESIS

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188

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GENESIS

8 weeks ago Stephanie M. Gogarten ▴ 870

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372

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GENESIS GWASTools GDSfile

updated 4 months ago by Stephanie M. Gogarten ▴ 870 • written 4 months ago by Mindy wang • 0

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379

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GENESIS SeqVarTools

updated 5 months ago by Stephanie M. Gogarten ▴ 870 • written 5 months ago by pjuge • 0

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424

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GENESIS autosome-only=FALSE? PCAir

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by gabry.scata • 0

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261

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GENESIS admixMap

6 months ago mailtoshivam13 • 0

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751

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GENESIS

updated 9 months ago by Stephanie M. Gogarten ▴ 870 • written 9 months ago by SuperDad • 0

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423

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assocTestSingle GENESIS

written 14 months ago by SuperD • 0

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692

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kingToMatrix GENESIS Plants

18 months ago • updated 17 months ago Monica • 0

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4.0k

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gwas genesis p-value q-q-plot

updated 3.2 years ago by Anna • 0 • written 4.4 years ago by solanum • 0

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820

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GENESIS

3.4 years ago Stephanie M. Gogarten ▴ 870

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668

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GENESIS

3.4 years ago Stephanie M. Gogarten ▴ 870

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1.4k

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genesis effect allele association analysis

updated 3.7 years ago by Stephanie M. Gogarten ▴ 870 • written 3.7 years ago by ucbtapc • 0

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777

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genesis gwastools

3.7 years ago Stephanie M. Gogarten ▴ 870

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889

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genesis

updated 3.8 years ago by Stephanie M. Gogarten ▴ 870 • written 3.8 years ago by o.giannakopoulou • 0

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1.1k

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genesis gds SeqVarData

updated 3.8 years ago by Stephanie M. Gogarten ▴ 870 • written 3.9 years ago by JT • 0

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1.5k

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Genesis

4.2 years ago alipka ▴ 10

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652

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GENESIS

updated 4.2 years ago by Stephanie M. Gogarten ▴ 870 • written 4.2 years ago by lassana.a.samarakoon ▴ 10

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848

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rna-seq tmixclust k-means clustering gene expression genesis

4.3 years ago astridite • 0

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792

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genesis

4.4 years ago Stephanie M. Gogarten ▴ 870

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1.3k

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GENESIS

4.5 years ago Corey.Cox • 0

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975

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GENESIS zscore wald

updated 4.5 years ago by Stephanie M. Gogarten ▴ 870 • written 4.5 years ago by lassana.a.samarakoon ▴ 10

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1.4k

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genesis output score

updated 4.5 years ago by Stephanie M. Gogarten ▴ 870 • written 4.5 years ago by lassana.a.samarakoon ▴ 10

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1.1k

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genesis admixmap

updated 4.6 years ago by Stephanie M. Gogarten ▴ 870 • written 4.6 years ago by GENOMIC_region • 0

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1.6k

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Genesis Installation

updated 4.7 years ago by Mike Smith ★ 6.5k • written 4.7 years ago by winstondunnmd ▴ 10

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1.1k

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genesis fitnullmodel gwas ascertainment

updated 4.7 years ago by mconomos ▴ 70 • written 4.7 years ago by ferranpauls10 • 0

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2.7k

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genesis admixmap

updated 5.0 years ago by Stephanie M. Gogarten ▴ 870 • written 5.0 years ago by GENOMIC_region • 0

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902

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genesis

5.0 years ago Stephanie M. Gogarten ▴ 870

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2.2k

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genesis pcrelate gds

updated 5.1 years ago by Stephanie M. Gogarten ▴ 870 • written 5.1 years ago by o.giannakopoulou • 0

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1.8k

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genesis gwastools seqarray

5.5 years ago • updated 5.2 years ago Stephanie M. Gogarten ▴ 870

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960

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GENESIS GWAS resampling resample statistics

5.2 years ago naglemi ▴ 10

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911

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GENESIS GWAS AssocTestMM

updated 5.4 years ago by mconomos ▴ 70 • written 5.4 years ago by naglemi ▴ 10

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893

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genesis pcrrelate gds

updated 5.5 years ago by Stephanie M. Gogarten ▴ 870 • written 5.5 years ago by roll • 0

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893

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genesis snprelate

5.6 years ago Stephanie M. Gogarten ▴ 870

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960

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GENESIS GWAS GDS

updated 5.6 years ago by zhengx ▴ 30 • written 5.6 years ago by naglemi ▴ 10

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770

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genesis

5.7 years ago Stephanie M. Gogarten ▴ 870

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1.2k

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GENESIS assoctestmm GWAS

updated 5.7 years ago by mconomos ▴ 70 • written 5.7 years ago by naglemi ▴ 10

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1.4k

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LMM GWAS GENESIS assocTestMM

updated 5.7 years ago by mconomos ▴ 70 • written 5.7 years ago by naglemi ▴ 10

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1.6k

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genesis pcair

5.9 years ago GENOMIC_region • 0

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1.8k

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genesis

5.9 years ago Stephanie M. Gogarten ▴ 870

39 results • Page 1 of 1

Recent ...

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Answer: Differentially expressed genes in monocle pseudotime by Gordon Smyth 50k

You might try the methods in this paper: Cheng J, Smyth GK*, Chen Y* (2023). Unraveling the timeline of gene expression: A pseudotempora…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you Michael for your attention to my question. I am truly grateful. I subsetted the data using lines of codes to include only the g…

Comment: [DiffBind] Obtaining normalization factors by Henry ▴ 10

I see, thank you for your suggestion! I managed to use a separate RLE normalization to obtain the size factors.

Answer: Memory errors using read.bismark? by Peter Hickey ▴ 690

Thanks for sharing an example file. This is a very large non-CpG methylation dataset, which are tricky to work with for a number of reason…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by Peter Hickey ▴ 690

Superficially, your issue is similar to [https://github.com/hansenlab/bsseq/issues/136](https://github.com/hansenlab/bsseq/issues/136). You…

Votes

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA

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