Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
GENESIS
•
reset
0
votes
1
reply
188
views
GENESIS: error in crossprod
GENESIS
8 weeks ago
Stephanie M. Gogarten
▴ 870
0
votes
2
replies
372
views
GENESIS: Can not use GdsGenotypeReader to read a gds file
GENESIS
GWASTools
GDSfile
updated 4 months ago by
Stephanie M. Gogarten
▴ 870 • written 4 months ago by
Mindy wang
• 0
0
votes
2
replies
379
views
SKAT-O method using GENESIS, question about range iterator using SeqVarWindowIterator
GENESIS
SeqVarTools
updated 5 months ago by
Stephanie M. Gogarten
▴ 870 • written 5 months ago by
pjuge
• 0
1
vote
1
reply
424
views
HOW to FIX - PCAir excludes all my SNPs because there is no chromosome information
GENESIS
autosome-only=FALSE?
PCAir
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
gabry.scata
• 0
0
votes
0
replies
261
views
How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS
admixMap
6 months ago
mailtoshivam13
• 0
2
votes
5
replies
751
views
assocTestSingle output with GxE
GENESIS
updated 9 months ago by
Stephanie M. Gogarten
▴ 870 • written 9 months ago by
SuperDad
• 0
0
votes
1
reply
423
views
Reference categories for factors
assocTestSingle
GENESIS
written 14 months ago by
SuperD
• 0
0
votes
2
replies
692
views
kinToMatrix creates an empty matrix (except for diagonal 0.5 values)
kingToMatrix
GENESIS
Plants
18 months ago • updated 17 months ago
Monica
• 0
1
vote
2
replies
4.0k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 3.2 years ago by
Anna
• 0 • written 4.4 years ago by
solanum
• 0
0
votes
1
reply
820
views
Approximations to Est and Est.SE in GENESIS
GENESIS
3.4 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
668
views
X chromosome analyses for males in GENESIS
GENESIS
3.4 years ago
Stephanie M. Gogarten
▴ 870
0
votes
3
replies
1.4k
views
Alternate allele for GENESIS?
genesis
effect allele
association analysis
updated 3.7 years ago by
Stephanie M. Gogarten
▴ 870 • written 3.7 years ago by
ucbtapc
• 0
0
votes
1
reply
777
views
using GENESIS R package with non-human species
genesis
gwastools
3.7 years ago
Stephanie M. Gogarten
▴ 870
0
votes
2
replies
889
views
Association testing model in GENESIS
genesis
updated 3.8 years ago by
Stephanie M. Gogarten
▴ 870 • written 3.8 years ago by
o.giannakopoulou
• 0
0
votes
1
reply
1.1k
views
GENESIS multiple gds files
genesis
gds
SeqVarData
updated 3.8 years ago by
Stephanie M. Gogarten
▴ 870 • written 3.9 years ago by
JT
• 0
0
votes
8
replies
1.5k
views
Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
4.2 years ago
alipka
▴ 10
2
votes
1
reply
652
views
Does GENESIS match scan IDs for genotype and phenotype data?
GENESIS
updated 4.2 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.2 years ago by
lassana.a.samarakoon
▴ 10
0
votes
0
replies
848
views
Normalisation of Data before loading in TMixClust
rna-seq
tmixclust
k-means clustering
gene expression
genesis
4.3 years ago
astridite
• 0
2
votes
1
reply
792
views
Why did the Wald test disappear from GENESIS?
genesis
4.4 years ago
Stephanie M. Gogarten
▴ 870
1
vote
3
replies
1.3k
views
Error in fitNullMM from GENESIS package on highly-related samples
GENESIS
4.5 years ago
Corey.Cox
• 0
1
vote
1
reply
975
views
Calculating the z score from wald test association results in GENESIS
GENESIS
zscore
wald
updated 4.5 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.5 years ago by
lassana.a.samarakoon
▴ 10
3
votes
6
replies
1.4k
views
Interpreting the output of score test using GENESIS
genesis
output
score
updated 4.5 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.5 years ago by
lassana.a.samarakoon
▴ 10
2
votes
4
replies
1.1k
views
Sporadic missingness with admixmmap
genesis
admixmap
updated 4.6 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.6 years ago by
GENOMIC_region
• 0
0
votes
3
replies
1.6k
views
Can't install Genesis
Genesis
Installation
updated 4.7 years ago by
Mike Smith
★ 6.5k • written 4.7 years ago by
winstondunnmd
▴ 10
0
votes
3
replies
1.1k
views
GENESIS: ascertainment in GWAS
genesis
fitnullmodel
gwas
ascertainment
updated 4.7 years ago by
mconomos
▴ 70 • written 4.7 years ago by
ferranpauls10
• 0
6
votes
11
replies
2.7k
views
Genesis: doubts with admixMAPMM
genesis
admixmap
updated 5.0 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.0 years ago by
GENOMIC_region
• 0
0
votes
1
reply
902
views
betas for binary outcome
genesis
5.0 years ago
Stephanie M. Gogarten
▴ 870
0
votes
13
replies
2.2k
views
GENESIS pcrelate() write gds file doesn't work
genesis
pcrelate
gds
updated 5.1 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.1 years ago by
o.giannakopoulou
• 0
4
votes
2
replies
1.8k
views
Imputed dosages in GENESIS
genesis
gwastools
seqarray
5.5 years ago • updated 5.2 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
960
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS
GWAS
resampling
resample
statistics
5.2 years ago
naglemi
▴ 10
1
vote
1
reply
911
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS
GWAS
AssocTestMM
updated 5.4 years ago by
mconomos
▴ 70 • written 5.4 years ago by
naglemi
▴ 10
1
vote
1
reply
893
views
GENESIS pcrelate() to load gds file and continue where the function broke
genesis
pcrrelate
gds
updated 5.5 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.5 years ago by
roll
• 0
0
votes
1
reply
893
views
Using previously calculated PCs in GENESIS
genesis
snprelate
5.6 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
960
views
Unable to build GDS with more than 255 scaffolds?
GENESIS
GWAS
GDS
updated 5.6 years ago by
zhengx
▴ 30 • written 5.6 years ago by
naglemi
▴ 10
0
votes
1
reply
770
views
selecting SNPs and samples in GENESIS
genesis
5.7 years ago
Stephanie M. Gogarten
▴ 870
0
votes
3
replies
1.2k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS
assoctestmm
GWAS
updated 5.7 years ago by
mconomos
▴ 70 • written 5.7 years ago by
naglemi
▴ 10
3
votes
4
replies
1.4k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM
GWAS
GENESIS
assocTestMM
updated 5.7 years ago by
mconomos
▴ 70 • written 5.7 years ago by
naglemi
▴ 10
2
votes
8
replies
1.6k
views
GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis
pcair
5.9 years ago
GENOMIC_region
• 0
0
votes
7
replies
1.8k
views
GENESIS: king2mat: subscript out of bounds
genesis
5.9 years ago
Stephanie M. Gogarten
▴ 870
39 results • Page
1 of 1
Recent ...
Replies
Answer: Differentially expressed genes in monocle pseudotime
by
Gordon Smyth
50k
You might try the methods in this paper: Cheng J, Smyth GK*, Chen Y* (2023). Unraveling the timeline of gene expression: A pseudotempora…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you Michael for your attention to my question. I am truly grateful. I subsetted the data using lines of codes to include only the g…
Comment: [DiffBind] Obtaining normalization factors
by
Henry
▴ 10
I see, thank you for your suggestion! I managed to use a separate RLE normalization to obtain the size factors.
Answer: Memory errors using read.bismark?
by
Peter Hickey
▴ 690
Thanks for sharing an example file. This is a very large non-CpG methylation dataset, which are tricky to work with for a number of reason…
Comment: Reading huge bismark coverage files using bbseq::read.bismark
by
Peter Hickey
▴ 690
Superficially, your issue is similar to [https://github.com/hansenlab/bsseq/issues/136](https://github.com/hansenlab/bsseq/issues/136). You…
Votes
Comment: [DiffBind] Obtaining normalization factors
Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var
Comment: Not fully paired differential gene expression analysis
Answer: GSVA error
Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
Awards
• All
Popular Question
to
paria.alipour
• 0
Popular Question
to
Eman
• 0
Popular Question
to
James W. MacDonald
65k
Scholar
to
nhaus
▴ 30
Popular Question
to
shepherl
3.8k
Locations
• All
Jerusalem,
just now
Spain,
1 minute ago
United States,
3 minutes ago
Switzerland,
9 minutes ago
Sweden,
13 minutes ago
Traffic: 733 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6