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Error in DESeqDataSet(se, design = design, ignoreRank) : all variables in design formula must be columns in colData
deseq2 R genomics
6.2 years ago mokunf • 0
3
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5
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3.1k
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Element-wise setdiff when psetdiff fails for GenomicRanges
genomicranges iranges genomics
updated 9.3 years ago by ▴ 60 • written 9.3 years ago by ▴ 150
2
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3
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1.7k
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ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
7.6 years ago oswaldo.lorenzo ▴ 10
0
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1
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1.6k
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Job: Bioinformatics Post-Doc Positions
cancer BIOINFORMATICS genomics RNAseq miRseq Job
9.1 years ago aaron • 0
0
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1
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935
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downloading genomic raw data
.raw files raw data genomics
7.2 years ago farahqureshi5 • 0
1
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1
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1.2k
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News: Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology go ontology bioinformatics genomics News
5.6 years ago laurent.albou • 0
0
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1
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779
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Job: Computational Biologist at Chinook Therapeutics
RNASeq Bioconductor Genomics
written 2.6 years ago by • 0
0
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1
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891
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Job: 'Omics data analyst for HPCBio, University of Illinois
Metagenomics GenomicVariation Genomics RNASeq ChIPSeq
21 months ago • updated 20 months ago Jenny Drnevich ★ 2.0k
1
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1
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1.6k
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How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
7.6 years ago oswaldo.lorenzo ▴ 10
0
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1
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977
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Job: 3.5 year cancer data scientist postdoc @ UEA, Norwich, UK
prostate cancer machine learning data science genomics Job
4.5 years ago • updated 4.3 years ago Daniel Brewer ▴ 100
0
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1
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524
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BioC packages in cancer genomics
genomics cancer
updated 13 months ago by ★ 3.9k • written 13 months ago by ▴ 670
0
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0
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1.7k
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Job: Bioinformatician / NGS Data Analyst (Stark Group, Vienna, Austria)
bioinformatician job ngs genomics Job
9.0 years ago stark • 0
1
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0
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2.2k
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Job: Postdoctoral/Senior Scientist Position in New York City- Mount Sinai School of Medicine
genomics data integration job ngs computational biology Job
8.9 years ago supindab ▴ 10
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1.5k
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Job: Come apply for our Epidemiologist, AncestryHealth role
genomics genetics design statistics scientist Job
8.8 years ago careers • 0
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0
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1.6k
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Job: Calling all Clinical Genomic Scientist
computational biology genomics genetics Python java Job
8.8 years ago careers • 0
0
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0
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1.9k
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Job: Post-doc/Senior Scientist in Integrative Genomics: Mount Sinai School of Medicine, New York, NY
postdoc genomics Job bioinformatician computational biology
8.7 years ago supindab ▴ 10
0
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0
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1.7k
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Job: Research Scientist in Bioinformatics/Statistical Genomics, Max Planck Institute, Nijmegen, Netherlands
job rnaseq rna-seq genomics data integration Job
8.6 years ago clyde.francks • 0
0
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0
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1.8k
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Job: Data scientist/bioinformatician - Paris
Genomics metabolomics biostatistics data integration Job
8.5 years ago David Enot ▴ 30
1
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0
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1.6k
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Job: Job Opening: Computational Biologists in Cambridge, MA and NYC
ngs computational biology R genomics bioinformatics Job
8.5 years ago mmartin ▴ 20
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0
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1.6k
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Job: Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
job bioinformatics ngs genomics statistics Job
8.1 years ago Hui Sun Leong ▴ 10
0
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0
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1.3k
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Job: Bioinformatics Postdoc in Functional Evolutionary Genomics, Heidelberg, Germany
rnaseq genomics evolution Job
8.1 years ago henrik.kaessmann • 0
1
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0
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1.8k
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Job: PostDoc at Novartis Oncology Basel - Intratumor heterogeneity
cancer genomics postdoc job Job
8.0 years ago Kauffmann, Audrey ▴ 60
2
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0
replies
1.4k
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Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
7.8 years ago enridomenici ▴ 10
0
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0
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985
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Job: Postdoctoral position in computational genomics of cancer at Cold Spring Harbor Laboratory
cancer genomics pharmacogenomics bioinformatics organoid Job
7.8 years ago glt38sheltie • 0
1
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0
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1.4k
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Job: Bioinformatics Scientist at NEXUS Personalized Health Technologies in Zurich
clinicaldata translational genomics diagnostics research Job
7.7 years ago Daniel Stekhoven ▴ 10
0
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0
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891
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Virus NGS data analysis?
genomics
7.3 years ago mathavanbioinfo ▴ 20
0
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0
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1.5k
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Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
7.2 years ago • updated 7.0 years ago Luo Weijun ★ 1.6k
0
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0
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1.2k
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Job: Bioinformaticist, Research Programmer
R genomics statistics Job
7.2 years ago radel • 0
0
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0
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1.5k
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Job: Postdoctoral Research Associate, Wellcome Trust-MRC Institute of Metabolic Science (Fixed Term)
genetics job genomics postdoc obesity Job
7.1 years ago njc65 • 0
1
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0
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1.3k
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Job: Expanding the impact of genomic data on drug development (Immuneering Corporation, Cambridge MA and New York NY)
computational biology drug development genomics Job
7.0 years ago mmartin ▴ 20
0
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0
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1.3k
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Job: Postdoc in Bioinformatics for Cancer Genomics
cancer genomics bioinformatics machine learning next-generation sequencing Job
6.8 years ago yang4414 • 0
1
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0
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1.3k
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Job: Computational Biologist position in CRUK Manchester Institute, UK
ngs prostate cancer genomics computational biology bioinformatician job Job
6.8 years ago • updated 6.7 years ago huisun.leong ▴ 10
0
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0
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1.2k
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Job: postdoc 3yrs bioinformatics bacterial population genomics: Wellington, New Zealand
bacteria evolution population genomics Job
6.8 years ago una.ren • 0
3
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0
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2.6k
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Job: PhD opportunity in Cambridge (Computational Biology and Data Science)
cancer deep learning genomics Job computational biology
6.6 years ago • updated 6.4 years ago Shamith.Samarajiwa ▴ 180
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0
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994
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Job: Biostatistician III @ Duke University
rnaseq precision medicine biomarker genomics Job
6.1 years ago ram330 • 0
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0
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1.2k
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Job: Postdoctoral Fellowship in Statistical Genetics and Genomics at the University of Michigan
genetics job biostatistics genomics bioinformatics Job
6.0 years ago xzhousph • 0
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1.1k
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Job: Postdoctoral Associate - Cancer Computational Biology
cancer genomics xenograph cloud Job
5.8 years ago tyler.chukwu • 0
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0
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1.9k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
5.8 years ago • updated 3.4 years ago Luo Weijun ★ 1.6k
0
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0
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2.6k
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Job: Postdoc in Population Genomics - UC Davis
bioinformatics evolution sequencing genome analysis genomics Job
5.5 years ago hschmidt • 0
1
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0
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1.1k
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Job: 2 Postdoc and 2 PhD positions in Regulatory genomics / Rare disease Gagneur lab, TU Munich
genomics genetics machine learning Job
5.5 years ago gagneur ▴ 10
0
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0
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916
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Job: Stipendium Hungaricum Fellowship with the Computational Biology Group of Semmelweis University
cancer genomics job budapest bioinformatics Job
5.4 years ago Endre Sebestyén ▴ 70
3
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0
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1.1k
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Job: Postdoctoral Scientist position at intersection of Single-Cell Cancer Genomics, Data Science and Bioconductor Software Development
job single-cell data science cancer genomics Job
5.3 years ago Stephanie Hicks ▴ 80
0
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0
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1000
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Job: Postdoc in Bioinformatics (UCSF Benioff Children's Hospital Oakland)
Bioinformatics RNA-seq Postdoc Genomics Statistical model Job
5.3 years ago djawaheer • 0
2
votes
0
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983
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Job: Research Fellow, Computational Cancer Genomics (University College London)
cancer genomics machine learning data integration multi-omics Job
5.2 years ago msecrier ▴ 20
0
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0
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1.3k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
5.2 years ago • updated 4.4 years ago Luo Weijun ★ 1.6k
0
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0
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917
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Job: Computational Biology / Genomics Internship at Denali Therapeutics
internship genomics genetics Job
5.2 years ago Steve Lianoglou ★ 13k
0
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0
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1.1k
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Job: Statistician I - Department of Data Sciences, Dana-Farber Cancer Institute
job biostatistics data science genomics Job
5.0 years ago Patrick Kimes ▴ 10
1
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0
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1.5k
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Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
5.0 years ago • updated 4.9 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
881
views
Job: Bioinformatics Scientist - BC Cancer Research Center, Vancouver, B
genomics analysis bioinformatics Job
4.9 years ago jmaanaki • 0
1
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0
replies
1.0k
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Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
4.6 years ago • updated 4.5 years ago Shamith.Samarajiwa ▴ 180
50 results • Page 1 of 1
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Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts by Michael Love 41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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