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GEOmetadb
•
reset
0
votes
1
reply
194
views
gds in GEOmetadb 2023-06-26 version is empty
GEOmetadb
written 11 weeks ago by
malat1_t
• 0
0
votes
0
replies
262
views
outdated GEOmetadb.sqlite
GEOmetadb
7 months ago
Robert Castelo
★ 3.0k
0
votes
2
replies
723
views
getSRAdbFile() does not work
SRAdb
GEOmetadb
13 months ago • updated 12 months ago
jfertaj
▴ 30
7
votes
5
replies
5.4k
views
Tutorial:
Accessing Public Genomic Data from Bioconductor
geoquery
geometadb
sradb
Tutorial
written 8.3 years ago by
Sean Davis
21k
3
votes
2
replies
1.1k
views
Unable to connect to 'watson.nci.nih.gov' on port 80 using GEOmetadb R library
geometadb
GEO
R
bioconductor
updated 5.2 years ago by
Sean Davis
21k • written 5.2 years ago by
gaby8638
▴ 20
0
votes
4
replies
1.2k
views
GEOquery using keywords in R
GEO
geoquery
geometadb
updated 5.3 years ago by
Sean Davis
21k • written 5.3 years ago by
Didi
▴ 10
5
votes
2
replies
1.5k
views
Cannot download GEOmetadb sqlite file
GEOmetadb
updated 14 months ago by
António Miguel de Jesus Domingues
▴ 490 • written 5.9 years ago by
arnaud.ceol.pro
▴ 10
2
votes
1
reply
1.0k
views
GEOmetadb package is missing "Organism" metadata field in all GSE accession IDs
geometadb
updated 5.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 5.9 years ago by
Bohdan Khomtchouk
▴ 10
0
votes
1
reply
972
views
GEOmetadb urgent question!
R
geometadb
updated 7.6 years ago by
James W. MacDonald
63k • written 7.6 years ago by
vasco.cluny
• 0
3
votes
0
replies
3.5k
views
Tutorial:
dplyr and the GEOmetadb package for mining NCBI GEO metadata
geometadb
dplyr
Tutorial
8.3 years ago
Sean Davis
21k
0
votes
1
reply
1.7k
views
Meta data for gene from GEO
Annotation
gpls
GEOquery
GEOmetadb
Annotation
gpls
GEOquery
GEOmetadb
updated 9.8 years ago by
Sean Davis
21k • written 9.8 years ago by
rohan bareja
▴ 200
0
votes
0
replies
1.5k
views
Fw: Meta data for gene from GEO
Annotation
gpls
GEOquery
GEOmetadb
Annotation
gpls
GEOquery
GEOmetadb
9.8 years ago
rohan bareja
▴ 200
0
votes
4
replies
1.8k
views
Meta data for gene from GEO
GEOquery
GEOmetadb
GEOquery
GEOmetadb
updated 9.8 years ago by
Sean Davis
21k • written 9.8 years ago by
Guest User
★ 12k
0
votes
0
replies
1.2k
views
getGEO vs GEOmetadb
Lung
Homo sapiens
Pseudomonas aeruginosa
GEOmetadb
Lung
Homo sapiens
Pseudomonas aeruginosa
10.3 years ago
Jack Zhu
▴ 170
0
votes
2
replies
1.4k
views
GEOmetadb query to retrieve sample groups
GEOmetadb
GEOmetadb
updated 10.3 years ago by
Sean Davis
21k • written 10.3 years ago by
Thomas Hampton
▴ 750
0
votes
0
replies
1.1k
views
getGEO for very large files
GO
GEOmetadb
GO
GEOmetadb
12.4 years ago
Sean Davis
21k
0
votes
5
replies
1.7k
views
downloading different kinds of microarray data
Sequencing
Microarray
Genetics
Annotation
gpls
convert
GEOquery
GEOmetadb
Sequencing
gpls
updated 13.1 years ago by
Alex Levitchi
▴ 30 • written 13.1 years ago by
Sean Davis
21k
0
votes
1
reply
1.3k
views
dynamic library() calls
GEOmetadb
GEOmetadb
13.2 years ago
Jeremiah H. Savage
▴ 110
0
votes
0
replies
1.1k
views
GEOquery question -- suppressing download for GPL queries?
Annotation
GEOquery
GEOmetadb
Annotation
GEOquery
GEOmetadb
13.6 years ago
Sean Davis
21k
0
votes
2
replies
1.1k
views
GEOmetadb query
aCGH
GO
aCGH
GEOmetadb
aCGH
GO
aCGH
GEOmetadb
updated 13.7 years ago by
Jack Zhu
▴ 170 • written 13.7 years ago by
BorisZybailov@gmail.com
▴ 10
0
votes
1
reply
1.7k
views
GEOmetadb: problem with SQLite database download
GEOmetadb
GEOmetadb
13.8 years ago
Axel Klenk
▴ 990
0
votes
13
replies
2.2k
views
GEOmetadb and gse organism type
Cancer
Breast
Organism
GEOmetadb
Cancer
Breast
Organism
GEOmetadb
updated 14.5 years ago by
Sean Davis
21k • written 14.5 years ago by
Wacek Kusnierczyk
▴ 180
0
votes
0
replies
1.8k
views
GEO metadata
Cancer
GEOquery
GEOmetadb
Cancer
GEOquery
GEOmetadb
14.5 years ago
Jack Zhu
▴ 170
0
votes
0
replies
1.3k
views
Solved: unable to connect to 'meltzerlab.nci.nih.gov' on port 80 and GEOmetadb.sqlite.gz file
GEOmetadb
GEOmetadb
15.0 years ago
gregory voisin
▴ 430
0
votes
1
reply
1.2k
views
GEOMETADB: unable to connect to 'meltzerlab.nci.nih.gov' on port 80 and GEOmetadb.sqlite.gz file
GEOmetadb
GEOmetadb
updated 15.0 years ago by
Sean Davis
21k • written 15.0 years ago by
gregory voisin
▴ 430
0
votes
0
replies
1.2k
views
problem with GEOquery
GEOmetadb
GEOmetadb
15.2 years ago
Sean Davis
21k
26 results • Page
1 of 1
Recent ...
Replies
Comment: Manual creation of qPCRset does not work
by
Ed Siefker
▴ 230
Thanks! This works for me.
Answer: Manual creation of qPCRset does not work
by
James W. MacDonald
63k
``` > mat <- matrix(rnorm(6*96), ncol = 6, nrow = 96, byrow = FALSE) > pd <- new("AnnotatedDataFrame", data = data.frame(1:6, row.names …
Answer: ukb Chromosomal position information was converted into SNPS
by
James W. MacDonald
63k
In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…
Comment: T.fit function of maSigPro returns error message
by
hanna.g
• 0
Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …
Answer: Deseq2, enrichGO and ensembl ID
by
James W. MacDonald
63k
1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…
Votes
Answer: Manual creation of qPCRset does not work
Answer: MDS plot edgeR
A: legend with gradient in ComplexHeatmap
Comment: comparing contrasts in edger/lima using makeContrasts function
Answer: comparing contrasts in edger/lima using makeContrasts function
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komal.rathi
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Popular Question
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Levi Waldron
1.1k
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to
Lucas Schiffer
▴ 240
Popular Question
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Ed Siefker
▴ 230
Popular Question
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James W. MacDonald
63k
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