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GEOquery
•
reset
0
votes
2
replies
68
views
How to get colData with GEOquery to prepare for DEseq2
GEOquery
DEseq2
3 days ago
Yugang
• 0
0
votes
1
reply
105
views
Error in downloading GEO Supplementary files
GEOquery
updated 7 weeks ago by
tcalvo
▴ 70 • written 7 weeks ago by
wasilewska.karolina
• 0
5
votes
7
replies
383
views
GEO series matrix empty
GEOquery
GEO
12 weeks ago • updated 10 weeks ago
gs.123
▴ 20
3
votes
2
replies
286
views
GEOquery returning NAs as probe names
GEOquery
updated 4 months ago by
Sean Davis
21k • written 4 months ago by
John
▴ 30
3
votes
23
replies
1.1k
views
GEOquery run into problem with Sys.setenv("VROOM_CONNECTION_SIZE")
GEOquery
VROOM
5 months ago
array chip
▴ 420
1
vote
2
replies
439
views
GEO RNASeq data query
GEOquery
RNASeq
GEO
updated 5 months ago by
Sean Davis
21k • written 5 months ago by
20yx17
▴ 10
0
votes
1
reply
471
views
Data frame with 0 columns and 0 rows
GEOquery
updated 5 months ago by
Basti
▴ 280 • written 5 months ago by
墨
• 0
2
votes
3
replies
307
views
Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery
CancerData
limma
RCy3
CancerInSilico
updated 6 months ago by
Steve Lianoglou
13k • written 6 months ago by
Caitlin
▴ 50
6
votes
7
replies
664
views
GEOquery reading error on Windows.
GEOquery
GEO
Gene
updated 6 months ago by
James W. MacDonald
59k • written 6 months ago by
Caitlin
▴ 50
1
vote
1
reply
432
views
Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray
GEOquery
cancerdata
MicroarrayData
updated 8 months ago by
James W. MacDonald
59k • written 8 months ago by
Caitlin
▴ 50
1
vote
1
reply
224
views
unable to find an inherited method for function ‘Table’ for signature ‘"GSE"
GEOquery
updated 10 months ago by
Sean Davis
21k • written 10 months ago by
pedram_torabian
▴ 10
0
votes
1
reply
295
views
GEOquery
GEOquery
updated 11 months ago by
Basti
▴ 280 • written 11 months ago by
curiousmind007
• 0
6
votes
5
replies
440
views
a problem of package ""
GEO
GEOquery
updated 11 months ago by
Hervé Pagès
15k • written 11 months ago by
sheldon19931016
▴ 20
2
votes
3
replies
294
views
Problem about Geoquery
GEO
GEOquery
11 months ago
sheldon19931016
▴ 20
7
votes
3
replies
4.0k
views
Tutorial:
Accessing Public Genomic Data from Bioconductor
geoquery
geometadb
sradb
Tutorial
7.0 years ago • updated 10 months ago
Sean Davis
21k
15 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
karenserrano
• 0
Hi Johannes, Could I request the same EnsDb creation for Medicago truncatula? Thank you very much, Karen
Answer: EnrichGO not working with db created from annotationhub
by
Guido Hooiveld
★ 3.2k
Did you notice the first message that was returned after you ran `enrichGO()`? Thus: `--> No gene can be mapped....` This basically means…
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
by
ksong
• 0
Hello my friends, I have exactly the same issue. May I ask if you have already solve this problem? I have tried `library(BiocParallel) regi…
Comment: cellCounts() function floating point error
by
Wei Shi
★ 3.3k
Yes we are currently working on generating a small example for cellCounts.
Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
by
ksong
• 0
Hi Dr Sudbery, yes I found looking at the coverage in IGV helps a lot. I did find some differences between CDS and UTR and between samples.…
Votes
Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
C: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o
Comment: Diffbind dba$binding slot finding Chr21 for an MM10 dataset
Answer: Handling NA values in limma's voom design matrix
Answer: Handling NA values in limma's voom design matrix
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to
Gordon Smyth
45k
Popular Question
to
Julie Zhu
★ 4.3k
Scholar
to
Hervé Pagès
15k
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James W. MacDonald
59k
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to
Aaron Lun
★ 27k
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