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Comment: Recalculated abundance data output table with DEseq2
by
Michael Love
34k
Yes, DESeq() then results(). When you print the table it will say MLE.
No we don’t have a function to do that.
Comment: Recalculated abundance data output table with DEseq2
by
michael.morash
•
0
Thanks for getting back to me so quickly. The final comparison we are looking to report are the effects of filtering out low count genes us…
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
by
Field -Ye
•
0
Hi Professor Smyth,
Thank you for pointing me to your previous publication. I went through the verbal part and found you did pursue the DG…
Comment: Macbook M1 install genefilter failed
by
Michael Love
34k
Try [n] to updating packages, and "no" to install from source.
Comment: Macbook M1 install genefilter failed
by
Alexandre
•
0
Hi Michael,
Sure
> BiocManager::install("DESeq2")
'getOption("repos")' replaces Bioconductor standard repositories,
see '?re…
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