updated 5.6 years ago by
Hervé Pagès
16k
•
written 5.6 years ago by
arendsee
▴
10
3
votes
10
replies
2.5k
views
1
vote
7
replies
2.5k
views
updated 6.1 years ago by
James W. MacDonald
62k
•
written 6.1 years ago by
greg.mulhearn
•
0
4
votes
6
replies
1.2k
views
updated 18 months ago by
James W. MacDonald
62k
•
written 19 months ago by
A.J.
▴
20
3
votes
4
replies
1.5k
views
updated 6.1 years ago by
Martin Morgan
25k
•
written 6.1 years ago by
Keith Hughitt
▴
180
1
vote
4
replies
2.6k
views
updated 5.4 years ago by
Michael Lawrence
11k
•
written 5.4 years ago by
hwu12
▴
10
0
votes
3
replies
1.7k
views
7.7 years ago
efratdahan21
•
0
0
votes
2
replies
3.5k
views
0
votes
2
replies
1.6k
views
6.0 years ago
rubi
▴
110
2
votes
2
replies
4.1k
views
updated 5.7 years ago by
Michael Lawrence
11k
•
written 5.7 years ago by
Gary
▴
20
3
votes
2
replies
819
views
updated 5.9 years ago by
Martin Morgan
25k
•
written 5.9 years ago by
Marlin
▴
20
1
vote
2
replies
1.6k
views
updated 4.4 years ago by
Robert Ivanek
▴
730
•
written 4.4 years ago by
JezDD
•
0
0
votes
2
replies
1.4k
views
7.8 years ago
arom2
•
0
2
votes
2
replies
1.3k
views
updated 3.7 years ago by
Michael Lawrence
11k
•
written 3.7 years ago by
mictadlo
▴
10
3
votes
2
replies
2.2k
views
updated 7.8 years ago by
Martin Morgan
25k
•
written 7.8 years ago by
KB
▴
50
3
votes
2
replies
3.5k
views
updated 6.2 years ago by
Michael Lawrence
11k
•
written 6.2 years ago by
Jon Bråte
▴
240
0
votes
1
reply
414
views
updated 13 months ago by
James W. MacDonald
62k
•
written 14 months ago by
edusbioinfo
•
0
0
votes
1
reply
1.1k
views
0
votes
1
reply
1.2k
views
7.7 years ago
Jon Bråte
▴
240
0
votes
1
reply
989
views
0
votes
1
reply
1.3k
views
updated 6.1 years ago by
florian.hahne@novartis.com
★
1.6k
•
written 6.1 years ago by
kbrevik
•
0
0
votes
1
reply
745
views
updated 4.3 years ago by
Michael Lawrence
11k
•
written 4.3 years ago by
alslonik
•
0
2
votes
1
reply
973
views
updated 8.6 years ago by
Hervé Pagès
16k
•
written 8.7 years ago by
topher.hamm
•
0
0
votes
0
replies
556
views
updated 3.3 years ago by
shepherl
3.5k
•
written 3.3 years ago by
domenick.braccia
•
0
0
votes
0
replies
1.0k
views
6.3 years ago
hwu12
▴
10
0
votes
0
replies
1.1k
views
Recent ...
Replies
Answer: Normalized counts from LRT or Wald test?
by
ATpoint
★
2.8k
If the same samples are present in the object then the normalized counts are exactly the same independent of the design or test you use.
Comment: Visualization of negative log CPM values
by
Gordon Smyth
47k
Sorry, I was wrong to say that log2(TPM) is always negative, but log2(TPM) is not more likely that log2(CPM) to be positive if both are com…
Comment: Visualization of negative log CPM values
by
Sabiha
▴
10
@gordonsmyth Apologies, I used a wrong term, I would have mentioned raw `p-value` instead. Unfortunately, only 3 gene passed FDR (BH) in th…
Comment: Extracting fitted expression matrix from Limma
by
sarah.kelliher
•
0
Thank you Prof Smyth for your prompt and informative reply, much appreciated.
Answer: DESeq2 or edgeR for Presence and Absence of Proteins
by
ATpoint
★
2.8k
No, both tools expect count data with certain distributional assumptions which are not satisfied by binary data.
Since you're a master …
Votes
Awards
• All
Scholar to
Gordon Smyth
47k
Popular Question to
ioannis.vardaxis
▴
30
Scholar to
Erqiang Hu
▴
50
Popular Question to
Matthew Thornton
▴
350
Scholar to
Hervé Pagès
16k
Locations
• All
Japan, 8 minutes ago
United Kingdom, 42 minutes ago
Portugal, 49 minutes ago
Republic of Ireland, 52 minutes ago
Brazil, 58 minutes ago
Japan, 8 minutes ago
United Kingdom, 42 minutes ago
Portugal, 49 minutes ago
Republic of Ireland, 52 minutes ago
Brazil, 58 minutes ago
Traffic: 437 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6