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GO.db
•
reset
2
votes
6
replies
4.2k
views
DiffBind installation doesn't work
diffbind
go.db
8.9 years ago • updated 8.8 years ago
Gary
▴ 20
0
votes
3
replies
1.5k
views
GO.db installation error
GO
go.db
7.5 years ago
cananhas
• 0
0
votes
5
replies
1.5k
views
hyperGTest not working on custom annotation package
GOstats
AnnotationDbi
GO.db
updated 5.1 years ago by
James W. MacDonald
65k • written 5.1 years ago by
lucas.michel
• 0
4
votes
2
replies
1.8k
views
mapIds to get GO terms
annotationdbi
go.db
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
sisterdot
▴ 10
2
votes
2
replies
1.4k
views
GO.db source obo file?
gene ontology
gostats
go.db
ontologies
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
brismiller
• 0
0
votes
3
replies
4.0k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor
R
go.db
annotationdbi
dependency
7.2 years ago
Sidi.Ma
• 0
1
vote
10
replies
2.7k
views
Error installing Annaffy
affy
annaffy
go.db
kegg.db
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
Angela
• 0
0
votes
3
replies
1.1k
views
How to annotate gene ontologies based on Gene Symbols in R
GO.db
annotate
6.1 years ago
dusan.petrovic
• 0
3
votes
3
replies
1.1k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO
ontology
GO.db
updated 5.6 years ago by
apkmirrorproject
• 0 • written 5.6 years ago by
marcinjoachimiak
▴ 10
0
votes
1
reply
1.8k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db
WGCNA
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
s3462450
▴ 10
0
votes
1
reply
1.5k
views
GO.db, pfma.db, KEGG.db
pfam
go.db
kegg.db
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
josefina.lascanomaillard
• 0
1
vote
2
replies
893
views
Getting list of genes enriched in each of Biological process terms
GOstats
Go.db
GeneOntology
3.1 years ago
MOHAMMAD
• 0
0
votes
2
replies
1.3k
views
Can't select GO from AnnotationHub orgDB packages
GO.db
AnnotationHub
OrgDB
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
Jenny Drnevich
★ 2.0k
0
votes
1
reply
1.7k
views
Error attaching GO.db package
GO.db
loadnamespace
annotation
chippeakanno
updated 9.1 years ago by
Dan Tenenbaum
★ 8.2k • written 9.1 years ago by
adrianna-christina
▴ 10
0
votes
1
reply
1.3k
views
GO.db/GOSim bugged or my bad?
go.db
software error
bug
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
lejeczek
▴ 10
4
votes
2
replies
3.8k
views
Cannot load or update GO.db
GO.db
bioclite
9.0 years ago
Steve Pederson
▴ 170
0
votes
1
reply
1.2k
views
Gene Ontolology and Annotation
Gene Ontolology
Annotation
GO.db
org.Sc.sgd.db
org.Hs.eg.db
updated 8.3 years ago by
Diego Diez
▴ 760 • written 8.3 years ago by
msp.cse
• 0
1
vote
2
replies
2.6k
views
Installation Error- GO.db
GO.db
updated 7.8 years ago by
James W. MacDonald
65k • written 7.8 years ago by
cpotter710
▴ 10
1
vote
1
reply
1.7k
views
How to install old version of GO.db in R
GO.db
R
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
animesh_10kuet
• 0
1
vote
5
replies
5.4k
views
can not able to install go.db
go.db
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
jarraya.amina.fst
• 0
0
votes
4
replies
1.1k
views
topGO "argument is of length zero" error
GO.db
topGO
updated 3.5 years ago by
James W. MacDonald
65k • written 3.5 years ago by
fklirono
• 0
1
vote
1
reply
1.3k
views
installing GO.bd for WGCNA
GO.db
WGCNA
updated 3.4 years ago by
James W. MacDonald
65k • written 3.4 years ago by
VictoriaL
• 0
2
votes
2
replies
994
views
retrieve gene IDs from GO.db GO
GO
GO.db
3.0 years ago
decppced
• 0
3
votes
2
replies
1.9k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db
AnnotationDbi
updated 3.2 years ago by
Martin Morgan
25k • written 3.2 years ago by
Guido Hooiveld
★ 3.9k
2
votes
1
reply
915
views
Geno Ontology Analysis using gene symbol
GO.db
Annotation
Clusterprofile
GeneOntology
updated 3.1 years ago by
Basti
▴ 780 • written 3.1 years ago by
MOHAMMAD
• 0
0
votes
1
reply
2.0k
views
GO.db won't install for using goseq package
GO.db
goseq
package installation
error
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
veerle
• 0
2
votes
17
replies
988
views
Problem installing package, version of dependency issue
AnnotationDbi
GO.db
updated 3 months ago by
Lluís Revilla Sancho
▴ 730 • written 3 months ago by
alexandre.blais
▴ 50
1
vote
6
replies
1.8k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db
AnnotationDbi
updated 2.6 years ago by
Jacky
• 0 • written 2.7 years ago by
Guandong Shang
▴ 40
0
votes
2
replies
1.5k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
17 months ago
Chruut
• 0
1
vote
1
reply
1.9k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler
GO.db
23 months ago
Lucía
▴ 10
0
votes
8
replies
692
views
GOslim missing GO term
GO.db
GOslim
4 months ago
amanda
• 0
1
vote
6
replies
1.1k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db
versioning
updated 2.3 years ago by
James W. MacDonald
65k • written 2.3 years ago by
rebeliscu
• 0
0
votes
1
reply
370
views
Which species does GO.db use
GO.db
annotationTools
updated 9 months ago by
Lluís Revilla Sancho
▴ 730 • written 9 months ago by
youngleel
• 0
2
votes
3
replies
97
views
How to retrieve gene ontology GO class from gene list?
GO.db
goTools
updated 20 hours ago by
James W. MacDonald
65k • written 1 day ago by
bandconductor
• 0
0
votes
1
reply
1.6k
views
Issue installing packages ATACseqQC and GO.db
GO.db
biocinstaller
package installation
atacseqqc
updated 6.1 years ago by
Ou, Jianhong
★ 1.3k • written 6.1 years ago by
n.pantelireis16
• 0
3
votes
8
replies
2.5k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
karl.stamm
▴ 10
2
votes
2
replies
955
views
Troubles installing GO.db
go.db
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
Aurora
▴ 20
1
vote
1
reply
1.1k
views
GO.db: searching for "top" GO term for list of terms
GO
go.db
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
TB18
• 0
1
vote
2
replies
1.4k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db
clusterprofiler
updated 5.4 years ago by
Martin Morgan
25k • written 5.4 years ago by
Leonardo Collado Torres
★ 1.0k
2
votes
5
replies
953
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db
annota
org.Hs.eg.
GO.db
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
brunogiotti
• 0
0
votes
5
replies
4.1k
views
Cannot install GO.db for R 3.6.1
GO.db
R 3.6.1
source package
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
Quinten
• 0
0
votes
1
reply
1.1k
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db
hgu95av2.db
R3.6.0
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
sarahqd
• 0
1
vote
4
replies
1.1k
views
Trouble installing package GO.db
GO.db
updated 4.3 years ago by
James W. MacDonald
65k • written 4.3 years ago by
C A
• 0
1
vote
2
replies
709
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
max.neal
• 0
0
votes
4
replies
1.4k
views
Error attaching TIN
software error
GO.db
TIN
updated 3.9 years ago by
Martin Morgan
25k • written 3.9 years ago by
AB3
• 0
1
vote
2
replies
1.3k
views
Help installing clusterProfiler
clusterProfiler
DO.db
GO.db
lazy load fail
updated 3.9 years ago by
James W. MacDonald
65k • written 3.9 years ago by
masaver
• 0
0
votes
1
reply
2.3k
views
GO.db failure to install
software error
go.db
6.2 years ago
matt.a.bennett25890
• 0
0
votes
0
replies
1.2k
views
GOstats install Error : .onLoad failed in loadNamespace() for 'GO.db'
gostats
go.db
6.1 years ago
crafy
• 0
0
votes
1
reply
932
views
ViSEAGO
gene_ontology
GOID
ViSEAGO
GO.db
custom2GO
2.8 years ago
jabbar_campbell
• 0
0
votes
1
reply
2.3k
views
how to sort y-axis category of GO result
GO.db
clusterProfiler
dotplot
barplot
2.5 years ago
Yang
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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