Biostar GOTHiC

Showing : GOTHiC • reset

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647

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diffhic gothic hicup hic-c hic

updated 3.6 years ago by Aaron Lun ★ 27k • written 3.6 years ago by mictadlo • 0

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425

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hic diffhic gothic hicup hic-c

3.6 years ago mictadlo • 0

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476

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GOTHiC

3.7 years ago alongalor ▴ 10

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524

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gothic

6.0 years ago manduchi • 0

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1.2k

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GOTHiC hic

6.8 years ago Nathan Sheffield ▴ 10

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1.5k

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HiTC gothic diffhic HiC

6.8 years ago Bogdan ▴ 640

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3.1k

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bioconductor gothic R

updated 7.0 years ago by Vicky_Tche • 0 • written 7.1 years ago by sv380 • 0

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774

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GOTHiC software error

7.2 years ago bef22 • 0

8 results • Page 1 of 1

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Comment: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k

Wow, I give you a full solution **including** explanation of basics and why the error you see even come up, and you still complain. Are the…

Comment: Error while running DESeq2 by ATpoint ★ 1.3k

You don't need stringtie unless you want to assemble a transcriptome. Just use featureCounts to make your count matrix. It will do fine.

Comment: Error while running DESeq2 by srikar • 0

Thank you . I will look into it, and upon running sum(countData<0), out of 231780 elements, 231642 of those are below 0. I think it may be …

Comment: rename phenotypic variables in pData (microarray) or colData (RNA-Seq) by Basti ▴ 330

`names(pData(microarray))[1]<- "NEW_VAR"` works, what is the error you have ?

Comment: Error while running DESeq2 by Basti ▴ 330

Your error might stem from stringie then, unfortunately I do not use it and I think you would have a better answer by opening a github issu…

Votes

A: How to handle the change in resultsNames() for DESeq2 ?

C: How to handle the change in resultsNames() for DESeq2 ?

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i

Answer: Although I successfully installed the package "simpleaffy'' , I cannot library i

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