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Comment: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k

Wow, I give you a full solution **including** explanation of basics and why the error you see even come up, and you still complain. Are the…

Comment: Error while running DESeq2 by ATpoint ★ 1.3k

You don't need stringtie unless you want to assemble a transcriptome. Just use featureCounts to make your count matrix. It will do fine.

Comment: Error while running DESeq2 by srikar • 0

Thank you . I will look into it, and upon running sum(countData<0), out of 231780 elements, 231642 of those are below 0. I think it may be …

Comment: rename phenotypic variables in pData (microarray) or colData (RNA-Seq) by Basti ▴ 330

`names(pData(microarray))[1]<- "NEW_VAR"` works, what is the error you have ?

Comment: Error while running DESeq2 by Basti ▴ 330

Your error might stem from stringie then, unfortunately I do not use it and I think you would have a better answer by opening a github issu…

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