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GOTerm
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GO term gene ontology enrichment analysis
GOTerm
2.1 years ago
Amazing570
• 0
2
votes
1
reply
587
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GO term "GO:1904936 interneuron migration" not found using biomart
biomart
goterm
updated 4.0 years ago by
Mike Smith
★ 6.5k • written 4.0 years ago by
A
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1
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1
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1.2k
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Goseq output with too many GO terms per category
go
goseq
goterm
category
updated 5.7 years ago by
Gordon Smyth
50k • written 5.7 years ago by
Juan
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0
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3
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1.2k
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DESeq2-->GO term heat map
deseq2
goterm
updated 5.3 years ago by
Michael Love
41k • written 5.3 years ago by
shaunnak
• 0
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0
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785
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RDAVIDWebService Package Official Gene Symbol IDs in GO Term Tables
RDAVIDWebService
Gene Ontology
GOTerm
biomaRt
3.8 years ago
ra711
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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