Bioconductor GOexpress

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GOexpress deseq2 expressionset

9.3 years ago martin.hoelzer ▴ 20

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goexpress

updated 8.9 years ago by kevin.rue ▴ 350 • written 8.9 years ago by martin.hoelzer ▴ 20

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goexpress gopro

7.9 years ago Bogdan ▴ 670

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GOexpress

updated 2.2 years ago by kevin.rue ▴ 350 • written 2.2 years ago by grolo • 0

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software error goexpress

updated 9.3 years ago by kevin.rue ▴ 350 • written 9.3 years ago by kcamnairb ▴ 10

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gene ontology goexpress

updated 8.0 years ago by kevin.rue ▴ 350 • written 8.0 years ago by mforde84 ▴ 20

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GOexpress subset_scores <0 rows>

7.0 years ago sina.zboron • 0

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RNA-seq transcriptomics gene ontology gene expression GOexpress

updated 5.0 years ago by kevin.rue ▴ 350 • written 5.0 years ago by atorson • 0

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goexpress ExpressionSet GO_analyse

5.4 years ago rezashiralmohammad • 0

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1.5k

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GOexpress heatmap gene ontology plot

updated 5.3 years ago by kevin.rue ▴ 350 • written 5.3 years ago by Antonio Campos • 0

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goexpress

updated 9.2 years ago by kevin.rue ▴ 350 • written 9.2 years ago by willj ▴ 30

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GOexpress GO.db GOSemSim

2.2 years ago Chruut • 0

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topgo biomart gene ontology goexpress pathway analysis

updated 8.7 years ago by kevin.rue ▴ 350 • written 8.7 years ago by Darya Vanichkina ▴ 130

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568

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GOexpress

2.9 years ago jms2520 ▴ 10

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

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Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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