Bioconductor GOexpress

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goexpress gopro

8.9 years ago Bogdan ▴ 670

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GOexpress

updated 3.2 years ago by kevin.rue ▴ 350 • written 3.2 years ago by grolo • 0

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GOexpress deseq2 expressionset

10.3 years ago martin.hoelzer ▴ 20

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goexpress

updated 9.9 years ago by kevin.rue ▴ 350 • written 9.9 years ago by martin.hoelzer ▴ 20

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software error goexpress

updated 10.3 years ago by kevin.rue ▴ 350 • written 10.3 years ago by kcamnairb ▴ 10

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RNA-seq transcriptomics gene ontology gene expression GOexpress

updated 6.0 years ago by kevin.rue ▴ 350 • written 6.0 years ago by atorson • 0

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gene ontology goexpress

updated 9.0 years ago by kevin.rue ▴ 350 • written 9.0 years ago by mforde84 ▴ 20

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GOexpress subset_scores <0 rows>

8.0 years ago sina.zboron • 0

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topgo biomart gene ontology goexpress pathway analysis

updated 9.7 years ago by kevin.rue ▴ 350 • written 9.7 years ago by Darya Vanichkina ▴ 130

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GOexpress heatmap gene ontology plot

updated 6.3 years ago by kevin.rue ▴ 350 • written 6.3 years ago by Antonio Campos • 0

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goexpress ExpressionSet GO_analyse

6.4 years ago rezashiralmohammad • 0

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GOexpress GO.db GOSemSim

3.2 years ago Chruut • 0

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goexpress

updated 10.3 years ago by kevin.rue ▴ 350 • written 10.3 years ago by willj ▴ 30

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740

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GOexpress

3.9 years ago jms2520 ▴ 10

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Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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