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GOexpress
•
reset
9
votes
8
replies
3.7k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
7.1 years ago
Bogdan
▴ 670
6
votes
7
replies
3.7k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
8.5 years ago
martin.hoelzer
▴ 20
0
votes
3
replies
3.5k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 7.9 years ago by
kevin.rue
▴ 350 • written 7.9 years ago by
Darya Vanichkina
▴ 120
2
votes
6
replies
2.6k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 8.1 years ago by
kevin.rue
▴ 350 • written 8.1 years ago by
martin.hoelzer
▴ 20
3
votes
6
replies
1.7k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 8.4 years ago by
kevin.rue
▴ 350 • written 8.4 years ago by
kcamnairb
▴ 10
5
votes
4
replies
1.5k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 7.2 years ago by
kevin.rue
▴ 350 • written 7.2 years ago by
mforde84
▴ 20
0
votes
2
replies
1.4k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
16 months ago
Chruut
• 0
3
votes
2
replies
1.3k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 8.4 years ago by
kevin.rue
▴ 350 • written 8.4 years ago by
willj
▴ 30
2
votes
4
replies
1.2k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
6.2 years ago
sina.zboron
• 0
1
vote
2
replies
1.2k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 4.5 years ago by
kevin.rue
▴ 350 • written 4.5 years ago by
Antonio Campos
• 0
2
votes
8
replies
1.0k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 17 months ago by
kevin.rue
▴ 350 • written 17 months ago by
grolo
• 0
0
votes
4
replies
1.0k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 4.2 years ago by
kevin.rue
▴ 350 • written 4.2 years ago by
atorson
• 0
0
votes
2
replies
956
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
4.6 years ago
rezashiralmohammad
• 0
0
votes
0
replies
428
views
GOexpress pvalue and gene sets
GOexpress
2.1 years ago
jms2520
▴ 10
14 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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Gordon Smyth
50k
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Jenny Drnevich
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