Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
GOseq
•
reset
1
vote
10
replies
2.4k
views
How to run Goseq for list of ensembl gene IDs
goseq
3.0 years ago
Lucky
• 0
4
votes
10
replies
3.0k
views
Question: GoSeq: opposite pwf plot for up- and downregulated genes
goseq
8.4 years ago • updated 5.4 years ago
Jakub
▴ 50
8
votes
10
replies
1.6k
views
Genes listed in GO categories
goseq
biomart
updated 5.8 years ago by
Gordon Smyth
50k • written 5.8 years ago by
frezende
• 0
3
votes
10
replies
2.4k
views
How to use GOseq without length bias
goseq
updated 8.2 years ago by
Steve Lianoglou
★ 13k • written 8.2 years ago by
b.nota
▴ 360
1
vote
9
replies
2.1k
views
Using goseq with unsupported organism
goseq
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
Mehdi
• 0
3
votes
9
replies
1.8k
views
Warning message when performing Gene Ontology analysis with goseq using hg38
goseq
updated 3.1 years ago by
James W. MacDonald
65k • written 3.1 years ago by
Nikolay Ivanov
• 0
2
votes
8
replies
2.4k
views
GOseq package: Which genes are included in the "numDEInCat"?
GOseq
KEGG
7.2 years ago
Xavier
▴ 10
5
votes
7
replies
4.8k
views
Using goseq on non-model organism - how to define genome?
goseq
go
genesetenrichment
updated 8.3 years ago by
Gordon Smyth
50k • written 8.3 years ago by
Jon Bråte
▴ 250
3
votes
7
replies
4.5k
views
goseq code after DESeq2 -NO IDEA!
goseq
DESEQ2
RSTUDIO
CODE
updated 8.4 years ago by
Steve Lianoglou
★ 13k • written 8.4 years ago by
amyfm
▴ 10
2
votes
7
replies
3.4k
views
mm10 ENSEMBL not available for GOSEQ
goseq
RNAseq
mm10
8.8 years ago
Merienne Nicolas
▴ 120
4
votes
6
replies
1.9k
views
goseq: not able to limit by GO categories when using wallenius approximation for over-representation test
goseq
updated 8.0 years ago by
Nadia Davidson
▴ 310 • written 8.0 years ago by
mrodrigues.fernanda
▴ 10
0
votes
6
replies
1.3k
views
Making use of the Apis mellifera assembly 2 data in goSeq
GO
Organism
Apis mellifera
goseq
GO
Organism
Apis mellifera
goseq
updated 12.1 years ago by
Hervé Pagès
16k • written 12.1 years ago by
Corby, Vanessa
▴ 30
2
votes
6
replies
1.9k
views
Can Tximport average transcript length be used for GOSeq?
deseq2
tximport
goseq
6.0 years ago
casey.rimland
▴ 150
2
votes
6
replies
1.6k
views
Print to txt file in specific way
goseq
sink
cat
print
updated 8.2 years ago by
Mike Smith
★ 6.5k • written 8.2 years ago by
b.nota
▴ 360
1
vote
6
replies
2.4k
views
GoSeq SupportedGenomes error
goseq
unsupported organisms
supportedgenomes
supportedorganisms
error
updated 7.1 years ago by
Gordon Smyth
50k • written 7.1 years ago by
tootiki
• 0
1
vote
6
replies
1.7k
views
goseq Error: could not find function "supportedOrganisms"
goseq
updated 7.0 years ago by
edmund.wright
• 0 • written 7.1 years ago by
colaneri
▴ 30
0
votes
6
replies
1.4k
views
How to link methylation code from UCSC (hg19-cg07790169) to ENSEMBL genome code (goseq procedure)
goseq
methylation
ensembl
ucsc
limma
6.1 years ago
dusan.petrovic
• 0
2
votes
6
replies
1.1k
views
Can't install GOSEQ (dependency problem) on CentOS 7!
goseq
r package
r
updated 4.5 years ago by
Mike Smith
★ 6.5k • written 4.5 years ago by
Raito92
▴ 60
0
votes
5
replies
2.1k
views
GO with R and Bioconductor
Transcription
GO
GOstats
biomaRt
topGO
goseq
Transcription
GO
GOstats
biomaRt
topGO
updated 13.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.1 years ago by
Duke
▴ 210
2
votes
5
replies
3.9k
views
gene set enrichment analysis of RNA-Seq data
Microarray
goseq
Microarray
goseq
updated 11.9 years ago by
Gordon Smyth
50k • written 12.0 years ago by
Julie Leonard
▴ 110
4
votes
5
replies
1.7k
views
Downgrading R to 3.6.0 version (GOseq problem)
goseq
installation
4.2 years ago
gdalsky
▴ 40
0
votes
5
replies
1.9k
views
GO enrichment with non-model organism, supplying GO mappings
clusterProfiler
goseq
topGO
DESeq2
updated 22 months ago by
James W. MacDonald
65k • written 22 months ago by
Lucía
▴ 10
3
votes
5
replies
1.7k
views
Does DEseq2 analysis make GOseq redundant?
deseq2
goseq
gene ontology
differential gene expression
6.7 years ago
david.rinker
▴ 10
2
votes
5
replies
2.3k
views
goseq error--"in names(tmp) = rep(names(map)"
goseq
updated 8.6 years ago by
Nadia Davidson
▴ 310 • written 8.7 years ago by
xdzperfect
• 0
0
votes
5
replies
1.5k
views
goseq - supportedOrganisms error
go
goseq
updated 7.1 years ago by
Gordon Smyth
50k • written 7.1 years ago by
starbug16
• 0
0
votes
5
replies
2.2k
views
How to get list of genes that are DE from the goseq analysis results
limma
goseq
mget
edgeR
updated 8.0 years ago by
Gordon Smyth
50k • written 8.0 years ago by
darshinimamindla
▴ 10
0
votes
5
replies
2.9k
views
Problem installing goseq and RCurl
goseq
goseq
updated 11.4 years ago by
Dan Tenenbaum
★ 8.2k • written 11.4 years ago by
Dave Tang
▴ 210
2
votes
5
replies
1.9k
views
GOseq: count bias correction variations?
Coverage
goseq
updated 7.0 years ago by
Gordon Smyth
50k • written 9.7 years ago by
Christopher Conley
▴ 40
1
vote
4
replies
1.7k
views
GOSeq: analysis of unsupported genome after HTseq and DEseq2 - building gene lengths, comparing contrasts and understanding results.
deseq2
goseq
htseqcounts
rnaseq
plant
updated 7.8 years ago by
Gordon Smyth
50k • written 7.8 years ago by
Ben Mansfeld
• 0
3
votes
4
replies
1.6k
views
Trying to account for gene length in topGO analysis
topgo
goseq
deseq2
updated 7.7 years ago by
Bernd Klaus
▴ 610 • written 7.8 years ago by
Ben Mansfeld
• 0
2
votes
4
replies
2.2k
views
goseq pwf length bias plot: help interpreting plot
goseq
updated 8.0 years ago by
Nadia Davidson
▴ 310 • written 8.0 years ago by
mrodrigues.fernanda
▴ 10
0
votes
4
replies
4.9k
views
goseq analysis - extracting list of my genes which are DE in the enriched GO category
GO
Category
goseq
GO
Category
goseq
updated 8.0 years ago by
darshinimamindla
▴ 10 • written 12.6 years ago by
Helen Wright
▴ 10
0
votes
4
replies
1.7k
views
danRer10 is missing in geneLenDataBase
genelendatabase
goseq
updated 8.1 years ago by
Nadia Davidson
▴ 310 • written 8.1 years ago by
Mehmet Ilyas Cosacak
• 0
1
vote
4
replies
350
views
goseq, warning and strange plot from nullp
goseq
8 weeks ago • updated 7 weeks ago
boczniak767
▴ 720
0
votes
4
replies
3.1k
views
Impossible to use goseq package - problem with geneLenDataBase
goseq
geneLenDataBase
bioclite
rstudio
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
amyfm
▴ 10
4
votes
4
replies
7.7k
views
Packages for GO and KEGG analysis on RNAseq data
GO
gage
goseq
KEGG
updated 9.4 years ago by
Gordon Smyth
50k • written 9.5 years ago by
Merienne Nicolas
▴ 120
2
votes
4
replies
3.0k
views
About GOSeq GO and KEGG enrichment analysis
goseq
8.6 years ago
jackipchiho
▴ 10
0
votes
4
replies
2.5k
views
goseq analysis
GO
graph
edgeR
goseq
GO
graph
edgeR
goseq
updated 11.4 years ago by
Alicia Oshlack
▴ 100 • written 11.4 years ago by
Dave Tang
▴ 210
0
votes
4
replies
4.5k
views
Questions about GOseq after DESeq2
goseq
DESeq2
goseq
DESeq2
updated 10.1 years ago by
Michael Love
41k • written 10.1 years ago by
amandine.fournier@chu-lyon.fr
▴ 80
1
vote
4
replies
1.3k
views
goseq package loading issues
DESeq2
goseq
3.1 years ago
avinashi
• 0
1
vote
3
replies
1.2k
views
How to resolve length bias and get GO/KEGG pathway for "non-standard" species in limma or goseq ?
rna-seq
limma
goseq
updated 7.9 years ago by
Nadia Davidson
▴ 310 • written 7.9 years ago by
CandiceChuDVM
▴ 40
2
votes
3
replies
1.3k
views
Can we use Entrez IDs for GOSeq?
goseq
entrez gene identifiers
updated 7.9 years ago by
James W. MacDonald
65k • written 7.9 years ago by
Mehmet Ilyas Cosacak
• 0
1
vote
3
replies
1.8k
views
goseq: Formatting category list for use with goseq
goseq
category test
updated 5.5 years ago by
James W. MacDonald
65k • written 5.5 years ago by
Mthabisi Moyo
▴ 30
1
vote
3
replies
2.4k
views
GOseq warning message.
goseq
updated 8.8 years ago by
Nadia Davidson
▴ 310 • written 8.8 years ago by
Pauly Lin
▴ 150
5
votes
3
replies
2.4k
views
GOSEQ: could not find any categories for many genes
goseq
mm9
8.9 years ago
Vivek.b
▴ 100
0
votes
3
replies
1.5k
views
goseq after edgeR
edger
goseq
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
mictadlo
▴ 10
3
votes
3
replies
2.0k
views
Goseq and yeast
goseq
yeast
9.1 years ago
Marek Gierlinski
▴ 30
0
votes
3
replies
1.3k
views
goseq: recent update seems to restrict the range of applications
goseq
updated 9.1 years ago by
Nadia Davidson
▴ 310 • written 9.3 years ago by
Oleg Moskvin
▴ 60
2
votes
3
replies
1.7k
views
GOseq error on running nullp
goseq
GO term
updated 6.5 years ago by
Gordon Smyth
50k • written 6.5 years ago by
pereyra.s
• 0
2
votes
3
replies
2.6k
views
Goseq analysis with Biocarta, Reactome, and NCI pathways?
goseq
graphite
9.1 years ago • updated 7.3 years ago
b.nota
▴ 360
50 results • Page
1 of 1
Recent ...
Replies
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Awards
• All
Popular Question
to
James W. MacDonald
65k
Popular Question
to
Pierre Lindenbaum
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Jenny Drnevich
★ 2.0k
Popular Question
to
Robert Castelo
★ 3.1k
Locations
• All
Denmark,
6 minutes ago
United States,
30 minutes ago
United States,
32 minutes ago
France,
36 minutes ago
United Kingdom,
43 minutes ago
Traffic: 917 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6