Showing : GOstats • reset
13
votes
2
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4.6k
views
Best method/package for Gene Set Enrichment Analysis in microarrays?
GSEA goseq topgo gega gostats
updated 8.4 years ago by ★ 3.2k • written 8.4 years ago by ▴ 40
0
votes
10
replies
4.1k
views
GOStat and multiple testing
GO GOstats GO GOstats
updated 19.7 years ago by ▴ 810 • written 19.7 years ago by ▴ 620
2
votes
9
replies
3.9k
views
Unable to calculate in parallel what can be calculated on a for loop
biocparallel foreach org.hs.eg.db gostats
updated 7.4 years ago by 25k • written 7.5 years ago by ▴ 730
0
votes
1
reply
3.5k
views
GOstats - Error in order(pvals) : argument 1 is not a vector
bioconductor r gostats
updated 7.8 years ago by 65k • written 7.8 years ago by • 0
6
votes
6
replies
3.4k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound)
Gostats go term annotation drosophila melanogaster error
updated 7.2 years ago by ▴ 10 • written 7.9 years ago by ▴ 300
0
votes
2
replies
2.9k
views
Odd Odds Ratio in GOstats package
GO GOstats GO GOstats
updated 8.0 years ago by • 0 • written 10.0 years ago by ▴ 10
0
votes
4
replies
2.9k
views
Identifying Processes as Upregulated or Downregulated
PROcess GOstats PROcess GOstats
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 100
4
votes
3
replies
2.8k
views
Select the annotation level during GO enrichment
topgo gostats go
updated 9.6 years ago by 65k • written 9.6 years ago by ▴ 80
0
votes
5
replies
2.7k
views
Help using ENSMUSG ids in GOstats
Microarray Pathways GOstats Microarray Pathways GOstats
updated 16.0 years ago by ★ 5.5k • written 16.0 years ago by ▴ 30
0
votes
3
replies
2.6k
views
GOStats: summary hyperGTest, count and size
Annotation GO Organism GOstats Annotation GO Organism GOstats
10.1 years ago Christine Gläßer ▴ 60
0
votes
7
replies
2.6k
views
GOstats: get genes for correspond� ing enriched GO term
GO GOstats GO GOstats
updated 11.8 years ago by ▴ 240 • written 11.8 years ago by ★ 13k
0
votes
14
replies
2.4k
views
GOStats/RBGL installation error
RBGL GOstats RBGL GOstats
updated 16.5 years ago by ▴ 170 • written 16.5 years ago by ▴ 260
0
votes
1
reply
2.3k
views
PFAM gene enrichment test using GOstats and Category
Annotation GO Organism GOstats Category Annotation GO Organism GOstats Category
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ▴ 10
0
votes
0
replies
2.3k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
9.6 years ago Luo Weijun ★ 1.6k
0
votes
2
replies
2.3k
views
How to use GOSlim with GOstats
GOstats GOstats
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ▴ 50
1
vote
10
replies
2.3k
views
Filtering genes for GOstats
gostats
9.2 years ago nonCodingGene ▴ 10
3
votes
3
replies
2.2k
views
GOstats "count" question
gostats
updated 9.5 years ago by 65k • written 9.5 years ago by ▴ 10
0
votes
12
replies
2.2k
views
new package for generating interactive HTML reports
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
updated 11.3 years ago by ★ 1.6k • written 11.3 years ago by ▴ 20
0
votes
6
replies
2.2k
views
problem with GOHyperGParams in package Category
Annotation GO GOstats Category Annotation GO GOstats Category
updated 16.1 years ago by ▴ 570 • written 16.1 years ago by ▴ 830
0
votes
8
replies
2.2k
views
foreach, doMC, and GOstats problems
GO GOstats GO GOstats
updated 13.1 years ago by ★ 8.2k • written 13.1 years ago by ▴ 570
0
votes
1
reply
2.2k
views
problem installing package GOstats
GOstats GOstats
updated 15.9 years ago by 65k • written 15.9 years ago by ▴ 340
0
votes
4
replies
2.2k
views
Mapping NCBI accession numbers to GO terms
GO GOstats GO GOstats
updated 13.9 years ago by 6.7k • written 13.9 years ago by ▴ 370
0
votes
5
replies
2.2k
views
GOstats problem with output
Annotation GO GOstats Annotation GO GOstats
updated 13.0 years ago by ★ 7.2k • written 13.0 years ago by ★ 1.5k
0
votes
6
replies
2.2k
views
hyperGTest interpretation of 'under' and finding all Entrez associated with a GO term
Annotation GO gostats
updated 9.4 years ago by 50k • written 11.4 years ago by ▴ 70
0
votes
6
replies
2.1k
views
GOstats and KEGG
Pathways GO GOstats Pathways GO GOstats
updated 17.4 years ago by ★ 7.4k • written 17.5 years ago by ▴ 190
0
votes
5
replies
2.1k
views
GO with R and Bioconductor
Transcription GO GOstats biomaRt topGO goseq Transcription GO GOstats biomaRt topGO
updated 13.2 years ago by 6.7k • written 13.2 years ago by ▴ 210
0
votes
10
replies
2.1k
views
Retrieve Entrez IDs for enriched GO terms
Microarray Annotation GO limma GOstats biomaRt Microarray Annotation GO limma GOstats
updated 14.6 years ago by ★ 2.0k • written 14.6 years ago by ▴ 90
0
votes
8
replies
2.0k
views
PFAM Enrichment in GOstats
PFAM Category GOstats
updated 8.9 years ago by ★ 1.2k • written 8.9 years ago by ▴ 930
0
votes
0
replies
2.0k
views
emacs org mode html export using jQuery DataTables (WAS: new package for generating interactive HTML reports)
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
11.3 years ago Malcolm Cook ★ 1.6k
0
votes
3
replies
2.0k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 350
0
votes
5
replies
2.0k
views
GOstats, geneCounts and gene universe filtering...
GO rat2302 probe GOstats topGO GO rat2302 probe GOstats topGO
updated 16.9 years ago by ★ 7.4k • written 17.0 years ago by ▴ 110
0
votes
3
replies
2.0k
views
hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 80
0
votes
12
replies
2.0k
views
Quick start to linking GO terms and microarray data
Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats
18.1 years ago michael watson IAH-C ★ 3.4k
0
votes
8
replies
2.0k
views
GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 13.1 years ago by ▴ 930 • written 13.1 years ago by ▴ 860
0
votes
7
replies
1.9k
views
Gene Ontology Annotations from Gene Names
Microarray GO Organism PROcess GOstats Microarray GO Organism PROcess GOstats
updated 10.2 years ago by 65k • written 10.2 years ago by ★ 13k
0
votes
3
replies
1.9k
views
Can not install 'affyio' with compiler icc on redhat linux ES5
GOstats GOstats
updated 7.8 years ago by ▴ 10 • written 13.4 years ago by ▴ 10
0
votes
10
replies
1.9k
views
comparing GO lists
Annotation GO Cancer graph GOstats Annotation GO Cancer graph GOstats
updated 16.7 years ago by ▴ 130 • written 16.7 years ago by ★ 5.5k
0
votes
1
reply
1.9k
views
Installing Gostat
GOstats GOstats
updated 10.5 years ago by 65k • written 10.5 years ago by ★ 13k
0
votes
2
replies
1.9k
views
HGNC annotation for use in GOstats
Annotation GOstats Annotation GOstats
updated 10.4 years ago by 65k • written 10.4 years ago by ▴ 200
0
votes
0
replies
1.9k
views
How to do GO enrichment analysis with GOstats while the gene set with no p values of gene difference expression
Transcription PROcess GOstats cycle Transcription PROcess GOstats cycle
13.7 years ago zhidong yuan ▴ 10
0
votes
8
replies
1.8k
views
GO terms
GO GOstats GO GOstats
updated 14.2 years ago by ★ 2.0k • written 14.2 years ago by ▴ 330
0
votes
3
replies
1.8k
views
Can't get RCurl...
GO Survival annotate genefilter affy graph limma GOstats biomaRt Category affycoretools
updated 17.1 years ago by 65k • written 17.1 years ago by ★ 2.2k
0
votes
0
replies
1.8k
views
GO with R and Bioconductor
Transcription Annotation GO GOstats biomaRt topGO GSEABase goseq Transcription Annotation
13.1 years ago Duke ▴ 210
0
votes
11
replies
1.8k
views
GOstats and GenePix arrays
GO GOstats GO GOstats
18.0 years ago Jacob Michaelson ▴ 320
0
votes
8
replies
1.8k
views
Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)
GO GOstats biomaRt GO GOstats biomaRt
updated 15.6 years ago by ★ 5.5k • written 15.6 years ago by ▴ 270
0
votes
4
replies
1.8k
views
Gene Ontology analysis for non-affy data
GO GOstats topGO GO GOstats topGO
updated 14.6 years ago by ▴ 400 • written 14.6 years ago by ▴ 50
0
votes
0
replies
1.8k
views
GOstats: hyperGTest function
Cancer GOstats Cancer GOstats
17.0 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
1.8k
views
how to run GO enrichment analysis for non-model organisms (errors when using hyperGTest)
gostats GO non_model
6.0 years ago zhaoran1124 • 0
0
votes
2
replies
1.7k
views
Incomplete gene IDs in KEGG pathway testing
gostats kegg
updated 9.4 years ago by 65k • written 9.4 years ago by • 0
0
votes
4
replies
1.7k
views
GOstats install error under Linux Debian
GO GOstats GO GOstats
updated 16.5 years ago by ★ 7.2k • written 16.5 years ago by ★ 1.7k
50 results • Page 1 of 1
Recent ...
Replies
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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