Bioconductor GPos

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3.1k

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findOverlaps GPos GenomicRanges subsetByOverlaps

updated 2.3 years ago by James W. MacDonald 65k • written 2.3 years ago by Robert ▴ 10

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1.2k

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GenomicRanges unique GPos

2.7 years ago • updated 2.6 years ago maltethodberg ▴ 170

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696

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GenomicRanges GPos

3.9 years ago Charles Plessy ▴ 180

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1.1k

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genomicranges granges gpos

updated 4.8 years ago by Hervé Pagès 16k • written 5.6 years ago by maltethodberg ▴ 170

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983

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genomicranges gpos granges

updated 5.5 years ago by Hervé Pagès 16k • written 5.6 years ago by maltethodberg ▴ 170

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1.1k

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software error snplocs gpos

updated 5.9 years ago by Hervé Pagès 16k • written 5.9 years ago by j.abbott • 0

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1.2k

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genomicranges gpos

updated 6.2 years ago by Hervé Pagès 16k • written 6.3 years ago by maltethodberg ▴ 170

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777

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genomicranges gpos

6.3 years ago maltethodberg ▴ 170

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

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Scholar to Peter Hickey ▴ 740