Bioconductor GPos

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3.1k

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findOverlaps GPos GenomicRanges subsetByOverlaps

updated 2.3 years ago by James W. MacDonald 65k • written 2.3 years ago by Robert ▴ 10

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genomicranges granges gpos

updated 4.8 years ago by Hervé Pagès 16k • written 5.6 years ago by maltethodberg ▴ 170

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genomicranges gpos

updated 6.3 years ago by Hervé Pagès 16k • written 6.3 years ago by maltethodberg ▴ 170

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1.2k

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GenomicRanges unique GPos

2.7 years ago • updated 2.6 years ago maltethodberg ▴ 170

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984

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genomicranges gpos granges

updated 5.6 years ago by Hervé Pagès 16k • written 5.6 years ago by maltethodberg ▴ 170

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698

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GenomicRanges GPos

3.9 years ago Charles Plessy ▴ 180

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software error snplocs gpos

updated 5.9 years ago by Hervé Pagès 16k • written 5.9 years ago by j.abbott • 0

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777

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genomicranges gpos

6.3 years ago maltethodberg ▴ 170

8 results • Page 1 of 1

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Answer: Why p value inconsistent when using different number of pathway score? by ATpoint ★ 4.0k

Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Thanks Robert!

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k