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GSA
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reset
0
votes
4
replies
1.7k
views
Use of confounders in downstream analysis
limma
GSA
confounding
within-pair analysis
450k
9.0 years ago
Aileen Bahl
▴ 10
0
votes
5
replies
1.6k
views
gene set (enrichment) analysis
gsea
gsa
updated 8.1 years ago by
Axel Klenk
★ 1.0k • written 8.1 years ago by
Bogdan
▴ 670
1
vote
1
reply
1.4k
views
Illumina Infinium Global Screening Array (GSA) v1.0 for CRLMM
crlmm
gsa
microarray
illumina
written 6.0 years ago by
shaun
• 0
0
votes
2
replies
1.6k
views
gene set enrichment analysis
GSEA
GSA
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
Bogdan
▴ 670
0
votes
7
replies
2.0k
views
Statistic for GSA
gsea
concept
gsa
updated 7.2 years ago by
Pekka Kohonen
▴ 190 • written 7.2 years ago by
Lluís Revilla Sancho
▴ 730
0
votes
1
reply
590
views
GSA type of input data
GSEA
GSA
vst
updated 15 months ago by
Michael Love
41k • written 15 months ago by
nhaus
▴ 30
1
vote
3
replies
1.4k
views
GSA error with any ExpressionSets
GSA
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
epercamh
• 0
0
votes
0
replies
732
views
GSA for comparison of geneset enricment analysis between multiple class
GSA
6.2 years ago
Seymoo
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Comment: Error retrieving ensembl gene id using biomaRt...
by
James W. MacDonald
65k
Or that. ;-D
Answer: Error retrieving ensembl gene id using biomaRt...
by
Mike Smith
★ 6.5k
I think you have the assignment operator (`<-`) the wrong way round. It should be `df_biomrt_tmp <- getBM(...`
Answer: Error retrieving ensembl gene id using biomaRt...
by
James W. MacDonald
65k
I can't reproduce. ``` > library(biomaRt) Warning message: package 'biomaRt' was built under R version 4.3.2 > library(org.Hs.eg.db…
Comment: DESeq2 setting significant p-value
by
Michael Love
41k
``` > counts <- matrix(1:16, ncol=4, dimnames=list(letters[1:4],NULL)) > coldata <- data.frame(x=1:4) > DESeqDataSetFromMatrix(counts, cold…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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