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GSA
•
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0
votes
4
replies
1.7k
views
Use of confounders in downstream analysis
limma
GSA
confounding
within-pair analysis
450k
9.0 years ago
Aileen Bahl
▴ 10
0
votes
5
replies
1.6k
views
gene set (enrichment) analysis
gsea
gsa
updated 8.1 years ago by
Axel Klenk
★ 1.0k • written 8.1 years ago by
Bogdan
▴ 670
1
vote
1
reply
1.4k
views
Illumina Infinium Global Screening Array (GSA) v1.0 for CRLMM
crlmm
gsa
microarray
illumina
written 6.0 years ago by
shaun
• 0
0
votes
2
replies
1.6k
views
gene set enrichment analysis
GSEA
GSA
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
Bogdan
▴ 670
0
votes
7
replies
2.0k
views
Statistic for GSA
gsea
concept
gsa
updated 7.2 years ago by
Pekka Kohonen
▴ 190 • written 7.2 years ago by
Lluís Revilla Sancho
▴ 730
0
votes
1
reply
591
views
GSA type of input data
GSEA
GSA
vst
updated 16 months ago by
Michael Love
41k • written 16 months ago by
nhaus
▴ 30
1
vote
3
replies
1.4k
views
GSA error with any ExpressionSets
GSA
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
epercamh
• 0
0
votes
0
replies
735
views
GSA for comparison of geneset enricment analysis between multiple class
GSA
6.2 years ago
Seymoo
• 0
8 results • Page
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Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…
Answer: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Votes
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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