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GSE
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2
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3
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1.6k
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Filtering the probe set ids from GSE file
geoquery
GSE
5.6 years ago
mahm
▴ 20
3
votes
11
replies
2.3k
views
Filtering Gene Symbols and Sample Description from GSE files of GEO
gene expression
geoquery
GSE
bioconductor
microarray
updated 5.6 years ago by
Sean Davis
21k • written 5.6 years ago by
mahm
▴ 20
0
votes
1
reply
1.2k
views
Analysing microarray raw data: GSEXXXX_non-normalized.txt
lumi
microarray
GSE
updated 6.1 years ago by
Gordon Smyth
50k • written 6.1 years ago by
mkd12
• 0
2
votes
2
replies
1.2k
views
how to obtain differentially expressed genes from a GSE serie
microarray
GSE
6.4 years ago
Salvo88
▴ 20
1
vote
2
replies
1.3k
views
Subsetting GSE data with information from two different slots
GSE
subsetting
microarray
updated 6.4 years ago by
Axel Klenk
▴ 990 • written 6.4 years ago by
A
▴ 40
0
votes
1
reply
1.4k
views
GEOquery download error
geoquery error message
GEOquery
GSE
GEO
6.6 years ago
Barah
▴ 20
0
votes
3
replies
1.5k
views
GEOquery problems while trying to process GSE soft files
GSE
soft files
GEO data
8.5 years ago
sz
• 0
1
vote
1
reply
1.1k
views
Compare Row.names and ID from GSE datasets
geoquery
GSE
identical
row.names
updated 9.5 years ago by
Sean Davis
21k • written 9.5 years ago by
PyPer
▴ 20
8 results • Page
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Comment: Minfi - estimatecellscount
by
clacarion
• 0
Thank you for your response, that's what i was thinking I will try with the rgset only and come back to tell you what's happening ! Best…
Answer: Minfi - estimatecellscount
by
James W. MacDonald
65k
Don't filter first. You are likely removing the CpGs that are used to estimate the cell counts.
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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