Bioconductor GSVA

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GSVA RNASeq limma

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by Jonathan ▴ 10

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451

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GSVA

updated 13 days ago by James W. MacDonald 65k • written 15 days ago by Lucy ▴ 60

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579

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ssgsea GSVA biotype proteincoding msigdb

updated 4 months ago by Robert Castelo ★ 3.3k • written 4 months ago by snijesh ▴ 20

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391

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GSVA

updated 7 months ago by Robert Castelo ★ 3.3k • written 8 months ago by Heba • 0

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ssgsea gsva piano egsea

updated 4 months ago by amin8w ▴ 10 • written 6.8 years ago by sina.nassiri ▴ 130

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1.6k

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escape UCell GSVA

updated 4 months ago by arina • 0 • written 14 months ago by Omer • 0

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1.8k

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GSVA

updated 6 weeks ago by Moritz ▴ 10 • written 2.9 years ago by resa • 0

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334

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GSVA

10 days ago • updated 8 days ago Alex • 0

8 results • Page 1 of 1

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

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C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

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Scholar to ATpoint ★ 4.0k