Bioconductor GSVA

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ssgsea gsva piano egsea

updated 4 months ago by amin8w ▴ 10 • written 6.8 years ago by sina.nassiri ▴ 130

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GSVA

updated 7 weeks ago by Moritz ▴ 10 • written 2.9 years ago by resa • 0

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GSVA

updated 14 days ago by James W. MacDonald 65k • written 15 days ago by Lucy ▴ 60

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escape UCell GSVA

updated 4 months ago by arina • 0 • written 14 months ago by Omer • 0

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GSVA RNASeq limma

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by Jonathan ▴ 10

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355

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GSVA

10 days ago • updated 9 days ago Alex • 0

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ssgsea GSVA biotype proteincoding msigdb

updated 4 months ago by Robert Castelo ★ 3.3k • written 4 months ago by snijesh ▴ 20

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392

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GSVA

updated 7 months ago by Robert Castelo ★ 3.3k • written 8 months ago by Heba • 0

8 results • Page 1 of 1

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0