Showing : GVIZ • reset
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187
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GC content track on GVIZ
Gviz
updated 10 weeks ago by 65k • written 10 weeks ago by • 0
0
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0
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336
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
5 months ago dbsgtk • 0
1
vote
0
replies
427
views
Gviz : UcscTrack
rtracklayer UCSC Gviz
5 months ago yujin ▴ 10
1
vote
3
replies
587
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer Gviz
updated 5 months ago by 16k • written 5 months ago by ▴ 10
0
votes
3
replies
724
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz Saccharomyces_cerevisiae Gviz ideogram
updated 7 months ago by ▴ 730 • written 7 months ago by • 0
0
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2
replies
532
views
how to add annotation on individual track
Gviz
updated 11 months ago by ▴ 730 • written 11 months ago by ▴ 50
0
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0
replies
386
views
Coloring reads in AlignmentsTrack based on mapq
Gviz
13 months ago Vinicius Henrique da Silva ▴ 40
1
vote
2
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915
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 1 day ago by ▴ 170 • written 14 months ago by ▴ 10
0
votes
0
replies
617
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
14 months ago gilliangoobie • 0
0
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5
replies
1.7k
views
Gviz: UcscTrack and "GC Percent" information
Gviz coMET
16 months ago • updated 6 months ago Daniel E. Weeks ▴ 30
0
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2
replies
1.1k
views
Gviz: Filtering AlignmentsTrack by read names
Gvi Gviz
updated 21 months ago by 65k • written 21 months ago by • 0
0
votes
1
reply
957
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
21 months ago rohitsatyam102 ▴ 20
2
votes
1
reply
1.3k
views
How to add gene symbol in GeneRegionTrack in Gviz
Gviz
updated 22 months ago by 65k • written 22 months ago by • 0
1
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3
replies
1.8k
views
GVIZ giving error with loading hg38 genome
R Gviz
2.0 years ago RUser743 • 0
0
votes
0
replies
531
views
Color of 2nd exon
GViz
2.3 years ago underscore • 0
1
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2
replies
1.4k
views
Gviz and datatracks
Gviz
updated 2.1 years ago by • 0 • written 2.3 years ago by ▴ 670
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0
replies
607
views
Modify y axis or add second y axis in Gviz
OverlayTrack Gviz
2.3 years ago Robert ▴ 10
1
vote
1
reply
831
views
Gviz DataTrack data transformation on the fly
aggregation Gviz DataTrack
updated 2.3 years ago by ▴ 730 • written 2.3 years ago by ▴ 10
0
votes
0
replies
822
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
2.4 years ago Ahdee ▴ 50
0
votes
0
replies
591
views
Y axis Data Track GVIZ
GVIZ
2.5 years ago • updated 2.4 years ago rbenel ▴ 40
1
vote
1
reply
1.5k
views
GVIZ on R not loading mm10 from UCSC
Gviz
2.6 years ago RUser743 • 0
0
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3
replies
911
views
Details AnnotationTrack swap densityplot and connectors
Gviz
2.6 years ago Hartorthereal • 0
1
vote
3
replies
1.2k
views
Gradient dotplot
Gviz
2.6 years ago sophieagger • 0
0
votes
0
replies
837
views
One read per line and other ordering of reads in Gviz
Gviz
2.6 years ago pillailab1 • 0
0
votes
4
replies
1.1k
views
window parameter in DataTrack function with a single sample
Gviz
2.6 years ago • updated 2.5 years ago rbenel ▴ 40
0
votes
1
reply
1.0k
views
Gviz: change position of transcriptAnnotation
Gviz
updated 2.7 years ago by 65k • written 2.7 years ago by ▴ 10
0
votes
4
replies
1.2k
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
updated 15 months ago by 65k • written 2.7 years ago by • 0
1
vote
3
replies
1.1k
views
Can't produce a generegiontrack from my txdb anymore
gviz GenomicFeatures
2.7 years ago A.J. ▴ 20
0
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0
replies
850
views
Combining dataTracks in Gviz by averaging or subtraction
Gviz
2.9 years ago gdeniz • 0
0
votes
0
replies
751
views
Gviz - Fixed width of title panel on left
Gviz
2.9 years ago rheery • 0
1
vote
3
replies
1.4k
views
Error in the UcscTrack() in package "Gviz"
DMR Methylation R Gviz
updated 5 months ago by ▴ 730 • written 3.0 years ago by • 0
0
votes
0
replies
671
views
Gviz: set colors for UTRs
plot color Gviz utr
3.0 years ago ginlucks • 0
0
votes
3
replies
1.0k
views
Gviz featureAnnotation disappear when zooming in
Gviz
updated 3.0 years ago by 65k • written 3.1 years ago by • 0
0
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0
replies
973
views
Gviz import lor reads from bam file
Gviz longreads
3.1 years ago ginlucks • 0
0
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1
reply
742
views
two tracks have the same axis
plot Gviz
3.4 years ago 腾 • 0
0
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2
replies
980
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation Alignment Gviz
3.5 years ago Vaibhav • 0
0
votes
2
replies
1.0k
views
Gviz vertical text labels
Gviz
updated 3.5 years ago by 65k • written 3.5 years ago by ▴ 90
0
votes
1
reply
872
views
Gviz, keeping strand information while zooming in
Gviz strand
3.5 years ago svenbioinf • 0
2
votes
2
replies
1.2k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz protein visualization UcscTrack protein domains
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 10
0
votes
1
reply
882
views
Gviz package for plotting DMRs
Gviz DMRs
updated 3.7 years ago by ▴ 730 • written 3.8 years ago by • 0
0
votes
3
replies
2.0k
views
Is it possible to group multiple bigWig files in Gviz DataTrack?
Gviz
3.8 years ago roman.hillje • 0
1
vote
3
replies
752
views
Highlight uniq transcripts in Gviz
Gviz
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by • 0
0
votes
2
replies
1.0k
views
Gviz AlignmentsTrack: how to prevent reads from overlapping each other
Gviz
updated 4.0 years ago by ▴ 730 • written 4.0 years ago by • 0
0
votes
2
replies
982
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz plotTracks
updated 4.1 years ago by ▴ 730 • written 4.2 years ago by • 0
0
votes
4
replies
1.1k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions gviz
updated 4.2 years ago by ▴ 140 • written 4.2 years ago by ▴ 30
1
vote
5
replies
1000
views
Plotting DMRs (Differentially Methylated Regions) using Gviz package in R
Gviz
updated 4.2 years ago by 65k • written 4.2 years ago by ▴ 10
0
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2
replies
835
views
BioMart webservice returned an invalid result
gviz biomart
4.2 years ago adrian86 • 0
0
votes
2
replies
863
views
I am wondering whether Gviz can support a plot like ggridges
Gviz
4.4 years ago Guandong Shang ▴ 40
0
votes
0
replies
648
views
Gviz coverage and sashimi not from BAM file
Gviz
4.4 years ago mario.keller.1988 ▴ 20
1
vote
1
reply
1.0k
views
Gviz UCSC tracks not visible
Gviz R UCSC Tracks genome locusplot
updated 4.5 years ago by ▴ 730 • written 4.5 years ago by • 0
50 results • Page 1 of 1
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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