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GWAS
•
reset
0
votes
1
reply
632
views
gwas power calculation for quantitative traits
power
GWAS
written 2.6 years ago by
rajya82
• 0
0
votes
4
replies
682
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium
SNP
gwas
GWASdata
ldblock
12 months ago
Weiqiong
• 0
0
votes
0
replies
698
views
Job:
Postdoc position - Genetic epi/statistical genetics
GWAS
cancer
biomarkers
PRS
21 months ago
Sarah
• 0
0
votes
0
replies
703
views
Job:
Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
biostatistics
computationalbiology
GWAS
22 months ago
helene.ruffieux
• 0
0
votes
0
replies
660
views
Job:
Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
computationalbiology
immunology
GWAS
biostatistics
2.1 years ago
helene.ruffieux
• 0
1
vote
2
replies
3.9k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 3.2 years ago by
Anna
• 0 • written 4.3 years ago by
solanum
• 0
0
votes
0
replies
866
views
Job:
Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS
lung cancer
functional genomics
eQTL
sequencing
Job
4.0 years ago
jiyeon.choi2
• 0
0
votes
3
replies
1.1k
views
GENESIS: ascertainment in GWAS
genesis
fitnullmodel
gwas
ascertainment
updated 4.7 years ago by
mconomos
▴ 70 • written 4.7 years ago by
ferranpauls10
• 0
0
votes
0
replies
720
views
Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS
CGEN
gxe
5.1 years ago
pwjeffries
• 0
0
votes
1
reply
927
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS
GWAS
resampling
resample
statistics
5.1 years ago
naglemi
▴ 10
1
vote
1
reply
902
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS
GWAS
AssocTestMM
updated 5.4 years ago by
mconomos
▴ 70 • written 5.4 years ago by
naglemi
▴ 10
0
votes
1
reply
939
views
Unable to build GDS with more than 255 scaffolds?
GENESIS
GWAS
GDS
updated 5.5 years ago by
zhengx
▴ 30 • written 5.5 years ago by
naglemi
▴ 10
0
votes
0
replies
848
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq
enrichment
GWAS
5.6 years ago
zhu
• 0
0
votes
3
replies
1.2k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS
assoctestmm
GWAS
updated 5.7 years ago by
mconomos
▴ 70 • written 5.7 years ago by
naglemi
▴ 10
3
votes
4
replies
1.4k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM
GWAS
GENESIS
assocTestMM
updated 5.7 years ago by
mconomos
▴ 70 • written 5.7 years ago by
naglemi
▴ 10
0
votes
1
reply
905
views
GWAS: access Imputation probabilities: snpStats
gwas
snpstats
GWAS
Imputation
snpStats
5.7 years ago
GENOMIC_region
• 0
0
votes
0
replies
1.1k
views
Job:
BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq
gwas
R
bioconductor
Job
6.7 years ago
IV
▴ 30
2
votes
0
replies
1.4k
views
Job:
Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job
GWAS
genetics
genomics
neuro
Job
7.8 years ago
enridomenici
▴ 10
0
votes
0
replies
1.1k
views
News:
gwascat package updated: new features in devel branch
GWAS
genetic epidemiology
SNP
News
8.6 years ago
Vincent J. Carey, Jr.
6.7k
19 results • Page
1 of 1
Recent ...
Replies
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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