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News:
Announcing the GBCC2025 Logo Design Contest!
Conference
Community
Galaxy
GBCC2025
Bioconductor
16 months ago
Maria Doyle
▴ 110
0
votes
2
replies
1.6k
views
DESeq2 analysis on Galaxy. PCA plot shows my replicates do not cluster and large intragroup variability
DESeq2
Galaxy
pca
updated 3.0 years ago by
swbarnes2
★ 1.4k • written 3.0 years ago by
mbxdn1
• 0
0
votes
3
replies
2.5k
views
StringTie output as Ballgown input
ballgown
StringTie
galaxy
rnaseq
updated 3.7 years ago by
Kevin Blighe
★ 4.0k • written 5.6 years ago by
lakshmi9c
• 0
0
votes
1
reply
1.5k
views
Controlling for sex variance in Galaxy DESeq2
DESeq2
RNASeq
Galaxy
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
István
• 0
0
votes
1
reply
878
views
deseq2 for enrichments between different subcellular fractions?
deseq2
galaxy
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
mikelirastor
• 0
1
vote
3
replies
1.9k
views
Running DESeq2 inside local Galaxy instance
deseq2
galaxy
8.9 years ago
gkuffel
▴ 10
0
votes
2
replies
1.9k
views
Data analysis in R
bioconductor
next-generation sequencing
galaxy
updated 9.2 years ago by
Lucas Schiffer
▴ 240 • written 9.2 years ago by
efraim.culfa
• 0
0
votes
4
replies
5.2k
views
Using DESeq2 inside Galaxy
rnaseq
galaxy
deseq2
updated 10.0 years ago by
Michael Love
43k • written 10.0 years ago by
Marcelo Pereira
▴ 70
0
votes
2
replies
1.6k
views
Inverting order of groups when using DESeq2
DESeq2
Galaxy
updated 10.0 years ago by
Michael Love
43k • written 10.0 years ago by
Marcelo Pereira
▴ 70
9 results • Page
1 of 1
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Comment: Inclusion of non-coding portions of transcripts (UTR-regions and introns) within
by
Pat
• 0
Ill be honest, I didnt trust any of these services for a long time. Im a political science major and the pressure around writing is intense…
Comment: Question on processing compound protein groups in limpa
by
brianpeterson1210
• 0
Thank you[,][1] Appreciated! [1]: http://paint3d.org
Comment: Subsetting DDS object for individual conditions over time
by
A
▴ 60
Hi @atpoint Thank you for the quick reply! and this makes sense! I will confirm with a corr to see how the SFs differ but also how DE dif…
Answer: Subsetting DDS object for individual conditions over time
by
ATpoint
★ 5.0k
It would surprise my quite a bit if the size factors would differ notably between subset or not. I would always try to keep the size factor…
Comment: GSEA error
by
Adithi
• 0
Thank you so much. That makes perfect sense to me. I will work on this.
Votes
Comment: Question about using LRT test for time course experiments with DESeq2
A: DESeq2 LRT test for multi-factor designs
Answer: RNA Seq using Lrt
Answer: DESeq2 LRT Reduced Formula
Answer: DESeq2: LRT or WALD guidance
Awards
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Teacher
to
ATpoint
★ 5.0k
Teacher
to
Michael Love
43k
Popular Question
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A
▴ 60
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Aichatou
• 0
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boczniak767
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