Showing : GenVisR • reset
2
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GenVisR Installation error message
genvisR
8.2 years ago • updated 8.1 years ago Deep Adhya ▴ 20
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4
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1.9k
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GenVisR- cnSpec CNV plot
GenVisR
6.2 years ago daijieqiong ▴ 10
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1
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1.0k
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how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr genvisr waterfall mutation
updated 5.4 years ago by ▴ 30 • written 5.4 years ago by • 0
3
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10
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2.7k
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error in package GenVisR while installing
GenVisR GenVis
updated 5 months ago by ▴ 30 • written 21 months ago by • 0
0
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2
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1.2k
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an error in TvTi: package GenVisR
GenVisR
updated 7.2 years ago by ▴ 30 • written 7.2 years ago by ▴ 670
0
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1
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1.1k
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Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 22 months ago by 16k • written 22 months ago by • 0
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1.5k
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How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR maftools
23 months ago e • 0
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0
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386
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GenVisR - adding on genomic positions to CovGen graph
GenVisR GenCov
18 months ago Amy_ • 0
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2
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1.1k
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Copy Number plot cnSpec - how to order samples
genvisr
5.9 years ago cedric.vmdl • 0
0
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1
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810
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Issues with lohSpec
genvisr lohSpec
5.8 years ago dharia.priyadarshani • 0
0
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0
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898
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Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
4.6 years ago sheneicechang • 0
0
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1
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690
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Adding layer to legend in waterfall plot
GenVisR ggplot2 waterfall
4.5 years ago sheneicechang • 0
0
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1
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1.0k
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Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants waterfall GenVisR
updated 3.4 years ago by ▴ 30 • written 3.4 years ago by ▴ 10
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Comment: Which input file is used for DGEList in EgdeR? by i.atanasoai • 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR? by Michael Love 41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Michael Love 41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts by Michael Love 41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Comment: DESeq filtering specific to contrasts by Michael Love 41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
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Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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