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GenVisR
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GenVisR - adding on genomic positions to CovGen graph
GenVisR
GenCov
18 months ago
Amy_
• 0
3
votes
10
replies
2.6k
views
error in package GenVisR while installing
GenVisR
GenVis
updated 4 months ago by
zlskidmore
▴ 30 • written 20 months ago by
abhisikta
• 0
0
votes
1
reply
1.1k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 22 months ago by
Hervé Pagès
16k • written 22 months ago by
Michel
• 0
0
votes
0
replies
1.4k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
22 months ago
e
• 0
0
votes
1
reply
987
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 3.4 years ago by
zlskidmore
▴ 30 • written 3.4 years ago by
Jeni
▴ 10
0
votes
1
reply
674
views
Adding layer to legend in waterfall plot
GenVisR
ggplot2
waterfall
4.4 years ago
sheneicechang
• 0
0
votes
0
replies
870
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
4.5 years ago
sheneicechang
• 0
0
votes
1
reply
1.0k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 5.3 years ago by
zlskidmore
▴ 30 • written 5.4 years ago by
ZihaoXing
• 0
0
votes
1
reply
788
views
Issues with lohSpec
genvisr
lohSpec
5.7 years ago
dharia.priyadarshani
• 0
0
votes
2
replies
1.1k
views
Copy Number plot cnSpec - how to order samples
genvisr
5.8 years ago
cedric.vmdl
• 0
0
votes
4
replies
1.8k
views
GenVisR- cnSpec CNV plot
GenVisR
6.2 years ago
daijieqiong
▴ 10
0
votes
2
replies
1.2k
views
an error in TvTi: package GenVisR
GenVisR
updated 7.1 years ago by
zlskidmore
▴ 30 • written 7.1 years ago by
Bogdan
▴ 670
2
votes
5
replies
2.6k
views
GenVisR Installation error message
genvisR
8.1 years ago
Deep Adhya
▴ 20
13 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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