Showing : GenVisR • reset
3
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10
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error in package GenVisR while installing
GenVisR GenVis
updated 5 months ago by ▴ 30 • written 21 months ago by • 0
2
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5
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2.7k
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GenVisR Installation error message
genvisR
8.2 years ago • updated 8.1 years ago Deep Adhya ▴ 20
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4
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1.9k
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GenVisR- cnSpec CNV plot
GenVisR
6.3 years ago daijieqiong ▴ 10
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2
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1.2k
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an error in TvTi: package GenVisR
GenVisR
updated 7.2 years ago by ▴ 30 • written 7.2 years ago by ▴ 670
0
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2
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1.1k
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Copy Number plot cnSpec - how to order samples
genvisr
5.9 years ago cedric.vmdl • 0
0
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1
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1.0k
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how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr genvisr waterfall mutation
updated 5.4 years ago by ▴ 30 • written 5.5 years ago by • 0
0
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1
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1.1k
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Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 22 months ago by 16k • written 22 months ago by • 0
0
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1
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692
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Adding layer to legend in waterfall plot
GenVisR ggplot2 waterfall
4.5 years ago sheneicechang • 0
0
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1
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1.0k
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Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants waterfall GenVisR
updated 3.5 years ago by ▴ 30 • written 3.5 years ago by ▴ 10
0
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1
reply
814
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Issues with lohSpec
genvisr lohSpec
5.8 years ago dharia.priyadarshani • 0
0
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0
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390
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GenVisR - adding on genomic positions to CovGen graph
GenVisR GenCov
18 months ago Amy_ • 0
0
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0
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902
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Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
4.6 years ago sheneicechang • 0
0
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0
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1.5k
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How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR maftools
23 months ago e • 0
13 results • Page 1 of 1
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Answer: Citation for edgeR user guide by Gordon Smyth 50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp by clacarion • 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp by clacarion • 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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