Bioconductor GenVisR

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GenVisR GenVis

updated 5 months ago by zlskidmore ▴ 30 • written 21 months ago by abhisikta • 0

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genvisR

8.2 years ago • updated 8.1 years ago Deep Adhya ▴ 20

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GenVisR

6.3 years ago daijieqiong ▴ 10

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GenVisR maftools

23 months ago e • 0

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GenVisR

updated 7.2 years ago by zlskidmore ▴ 30 • written 7.2 years ago by Bogdan ▴ 670

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genvisr

5.9 years ago cedric.vmdl • 0

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Install mainDropMut GenVisR

updated 22 months ago by Hervé Pagès 16k • written 23 months ago by Michel • 0

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GenVisr genvisr waterfall mutation

updated 5.4 years ago by zlskidmore ▴ 30 • written 5.5 years ago by ZihaoXing • 0

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variants waterfall GenVisR

updated 3.5 years ago by zlskidmore ▴ 30 • written 3.5 years ago by Jeni ▴ 10

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GenVisR mutation frequency R cancer bioconductor

4.6 years ago sheneicechang • 0

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genvisr lohSpec

5.8 years ago dharia.priyadarshani • 0

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GenVisR ggplot2 waterfall

4.5 years ago sheneicechang • 0

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GenVisR GenCov

18 months ago Amy_ • 0

13 results • Page 1 of 1

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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by James W. MacDonald 65k

You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

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C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0