Showing : Gene • reset
9
votes
10
replies
1.4k
views
Mapping of GENE symbols into ENTREZ
limma annotation Gene
4.6 years ago • updated 4.2 years ago omarrafiqued ▴ 50
6
votes
7
replies
2.2k
views
GEOquery reading error on Windows.
GEOquery GEO Gene
updated 2.5 years ago by 65k • written 2.5 years ago by ▴ 50
6
votes
2
replies
2.2k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation entrez gene ids software error
updated 5.0 years ago by 50k • written 5.0 years ago by ▴ 60
5
votes
5
replies
1.9k
views
threeUTRsByTranscript per GENE
GenomicFeatures Transcript gene threeUTRsByTranscript
updated 3.2 years ago by ★ 1.5k • written 4.7 years ago by ▴ 10
3
votes
2
replies
3.5k
views
How to Find OMIM id's Corresponding to a List of Gene Symbols in R?
microarray omim gene disorder
updated 9.1 years ago by ▴ 30 • written 9.1 years ago by ▴ 20
3
votes
3
replies
1.2k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 4.8 years ago by 65k • written 4.8 years ago by • 0
3
votes
2
replies
532
views
please resolve the issue
gene ExpressionData
updated 13 months ago by 65k • written 13 months ago by • 0
2
votes
4
replies
957
views
Joint pathway Analysis using both gene and metabolite data sets
data integration gene metabolite
4.1 years ago emisecherre • 0
2
votes
5
replies
1.2k
views
DESeq2-result files (.csv): Is there a convention for the IDs (e.g. gene names if produced for genes)
deseq2 gene format
4.8 years ago miriam.mueller • 0
1
vote
4
replies
1.1k
views
gene Isoforms quantification using RNA-seq data
gene isoform quantification rna-seq
updated 4.7 years ago by ★ 1.3k • written 4.7 years ago by • 0
1
vote
3
replies
1.7k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 3.4 years ago by ▴ 190 • written 3.5 years ago by • 0
1
vote
4
replies
792
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
18 months ago faiza • 0
1
vote
2
replies
721
views
gene ontologies for a set of genes
gene ontology
2.7 years ago Bogdan ▴ 670
0
votes
5
replies
6.2k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2 gene columns output
updated 8.5 years ago by 41k • written 8.5 years ago by ▴ 10
0
votes
2
replies
999
views
I want to use global test.
gene r clst rpy globaltest
3.1 years ago • updated 3.0 years ago Kim • 0
0
votes
0
replies
449
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
12 months ago Priya • 0
0
votes
0
replies
524
views
Gene expression changes in one condition
RNASeq Gene ExpressionData
2.4 years ago AZ ▴ 30
0
votes
2
replies
3.6k
views
Web Scraping From Pubmd (I want to extract gene articles form pubmed abstract and pubmed id i want to extract for number of genes)
cancer gene
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
0
votes
1
reply
291
views
gene aligning reference
geneRecommender gene
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
2
replies
3.6k
views
Gene body coverage plot
plot gene GenomicRanges Coverage R
updated 2.1 years ago by ▴ 20 • written 2.1 years ago by • 0
0
votes
0
replies
621
views
TFutils database
TFutils mouse gene convert
2.9 years ago nicocillari • 0
0
votes
2
replies
543
views
How to find the number of protein-coding genes in each chromosome arm in human?
gene chromosome proteincodinggene
12 months ago Liliian • 0
0
votes
2
replies
1.6k
views
How to filter the coding protein genes by EnsDb.Hsapiens.v86
EnsDb.Hsapiens.v86 gene
2.1 years ago beslinail • 0
0
votes
4
replies
991
views
Fonction of genes/metabolites in a pathway?
gene metabolite functionnal annotation pathways
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by • 0
0
votes
3
replies
1000
views
PureCN gene LOH very common, amp/del not
PureCN gene amplification deletion loh
updated 4.0 years ago by ▴ 130 • written 4.0 years ago by ▴ 10
0
votes
1
reply
805
views
WGCNA - Network construction and module detection
gene Clustering wgcna flashclust
updated 20 months ago by ▴ 50 • written 20 months ago by ▴ 20
26 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
I am not sure how your comment helps here?
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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