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GeneMeta
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303
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H bond prediction of two sequences
GeneMeta
generegulation
19 months ago
Marcus
• 0
5
votes
4
replies
1.7k
views
meta analysis of microarrays of small sample sizes
preprocessing
microarray
genemeta
updated 7.5 years ago by
alexvpickering
▴ 110 • written 7.5 years ago by
Lian Liu
▴ 20
0
votes
2
replies
1.5k
views
Missing values - metaArray, GeneMeta, RankProd, metahdep
RankProd
GeneMeta
metaArray
RankProd
GeneMeta
metaArray
12.7 years ago
boczniak767
▴ 720
0
votes
0
replies
916
views
Obtaining unadjusted permutation p-value from GeneMeta package
GeneMeta
GeneMeta
13.5 years ago
Seungwoo Hwang
▴ 80
0
votes
0
replies
1.1k
views
GeneMeta for 2 color microarray
Microarray
limma
GeneMeta
Microarray
limma
GeneMeta
14.0 years ago
Paul Leo
▴ 970
0
votes
6
replies
1.4k
views
Combining two datasets - help to use GeneMeta.
rae230a
affy
GeneMeta
rae230a
affy
GeneMeta
updated 17.9 years ago by
Darlene Goldstein
▴ 230 • written 17.9 years ago by
Sharon Anbu
▴ 480
0
votes
0
replies
786
views
question about the GeneMeta package
GeneMeta
GeneMeta
18.8 years ago
ivan.borozan@utoronto.ca
▴ 80
7 results • Page
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions
by
JKim
• 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
James W. MacDonald
65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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