Bioconductor GeneOntology

Showing : GeneOntology • reset

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309

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 6 weeks ago by Michael Love 41k • written 6 weeks ago by Filipe • 0

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1.6k

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rnaseq rnaseqGene geneontology

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by acram • 0

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786

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microRNA gene RNASeqRData edgeR geneontology

17 months ago faiza • 0

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510

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GO GeneOntology LocusIDtogeneIDconversion

18 months ago BioinFo.X • 0

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1.6k

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Annotation GeneOntology topGO GO

updated 21 months ago by James W. MacDonald 65k • written 22 months ago by Raito92 ▴ 60

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885

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GOstats Go.db GeneOntology

3.1 years ago MOHAMMAD • 0

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907

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GO.db Annotation Clusterprofile GeneOntology

updated 3.1 years ago by Basti ▴ 750 • written 3.1 years ago by MOHAMMAD • 0

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1.3k

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topGO enrichmentanalysis geneontology

updated 3.2 years ago by Lluís Revilla Sancho ▴ 730 • written 3.2 years ago by Aini • 0

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7.0k

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clusterprofiler geneontology

updated 6.4 years ago by thokall ▴ 160 • written 6.4 years ago by giuseppe0525 • 0

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969

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geneontology R go semantic similarity

updated 7.3 years ago by Valerie Obenchain ★ 6.8k • written 7.3 years ago by manasa22.reddy • 0

10 results • Page 1 of 1

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Comment: what is the sampleFiles by James W. MacDonald 65k

I don't see any sampleFiles argument for any function in that package. Ideally you would at least tell us what function you are using.

Comment: Interaction Terms in DESeq2 - Shrinkage by Michael Love 41k

Yes, apeglm requires relevel and nbinomWaldTest to generate the coefficient estimate and its SE. Alternatively you can use ashr with a con…

Comment: A ComBat-seq issue: the covariates are confounded by schlumbohm • 0

Dear ATpoint, thank you for the comment. I did correct the question. For the group, I did accidentally share the input for all three batch…

Comment: Memory errors using read.bismark? by Peter Hickey ▴ 690

If you process serially (i.e. with `BPPARAM = SerialParam()`) then you might be okay. The final object will be on the order of 250 GB in-me…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…

Votes

Comment: Not fully paired differential gene expression analysis

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

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