Bioconductor GeneOntology

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910

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GO.db Annotation Clusterprofile GeneOntology

updated 3.1 years ago by Basti ▴ 770 • written 3.1 years ago by MOHAMMAD • 0

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311

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 7 weeks ago by Michael Love 41k • written 7 weeks ago by Filipe • 0

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888

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GOstats Go.db GeneOntology

3.1 years ago MOHAMMAD • 0

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788

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microRNA gene RNASeqRData edgeR geneontology

18 months ago faiza • 0

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1.3k

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topGO enrichmentanalysis geneontology

updated 3.2 years ago by Lluís Revilla Sancho ▴ 730 • written 3.2 years ago by Aini • 0

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1.6k

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Annotation GeneOntology topGO GO

updated 22 months ago by James W. MacDonald 65k • written 22 months ago by Raito92 ▴ 60

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1.6k

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rnaseq rnaseqGene geneontology

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by acram • 0

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7.0k

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clusterprofiler geneontology

updated 6.4 years ago by thokall ▴ 160 • written 6.4 years ago by giuseppe0525 • 0

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511

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GO GeneOntology LocusIDtogeneIDconversion

18 months ago BioinFo.X • 0

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971

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geneontology R go semantic similarity

updated 7.3 years ago by Valerie Obenchain ★ 6.8k • written 7.3 years ago by manasa22.reddy • 0

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Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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