Showing : Genetics • reset
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241
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accesing gene name RNAseq
genetics GeneticsPed Genetics
5 months ago Gülsüm • 0
0
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0
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345
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Job: Bioinformatics Research Associate, Genomics and Genetics
genomes Genetics
5 months ago JP Carter ▴ 40
0
votes
3
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646
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Multiple Testing When Using Multiple Contrasts/Comparisons in DESEQ2
MultipleComparison DESeq2 Genetics contrasts RNASeq
updated 9 months ago by 65k • written 9 months ago by • 0
3
votes
5
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917
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calculate distance to a certain sequence in one gene
SummarizedExperiment Genetics
updated 12 months ago by 65k • written 12 months ago by • 0
0
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0
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871
views
Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
19 months ago gaow • 0
0
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0
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887
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
3.3 years ago António Miguel de Jesus Domingues ▴ 490
0
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0
replies
1.1k
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Job: R programmer position in genetic epidemiology/bioconductor
genetics genomics software Job
3.5 years ago Vincent J. Carey, Jr. 6.7k
2
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0
replies
1.2k
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Job: developer/project management position at Harvard Medical School
softwaredevelopment Job job cloudcomputing genetics
3.6 years ago • updated 3.2 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
replies
1.9k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
5.8 years ago • updated 3.4 years ago Luo Weijun ★ 1.6k
3
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6
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1.1k
views
Extremely big genes in annotation TxDb packages
annotation txdb AnnotationData Genetics
updated 3.8 years ago by 65k • written 3.8 years ago by ▴ 10
0
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1
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1.2k
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DiffBind - Counting reads - counts not found
diffbind differential analysis genetics #chip-seq
updated 5.1 years ago by ★ 5.2k • written 5.2 years ago by • 0
0
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0
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921
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Job: Computational Biology / Genomics Internship at Denali Therapeutics
internship genomics genetics Job
5.2 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
756
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package for mismatch distribution?
genetics statistics
5.3 years ago myriam.croze07 • 0
1
vote
0
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1.1k
views
Job: 2 Postdoc and 2 PhD positions in Regulatory genomics / Rare disease Gagneur lab, TU Munich
genomics genetics machine learning Job
5.5 years ago gagneur ▴ 10
0
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1
reply
1.0k
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Normalization and Quality Control for Multiple scRNAseq Data Sets
normalization rnaseq genetics batch effect dropout
updated 5.5 years ago by ★ 13k • written 5.5 years ago by • 0
0
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1
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1.6k
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Get Gene IDs for a list of Gene Names in R
r bioinformatics org.Hs.eg.db genetics
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
1
vote
1
reply
958
views
co-evolution analysis for RNA
genetics
5.9 years ago tg369 ▴ 40
2
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0
replies
1.2k
views
Job: Statistical Geneticist at Denali Therapeutics, South San Francisco, CA, USA
job genetics drug development neurodegeneration Job
5.9 years ago sandmann.t ▴ 70
0
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0
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1.2k
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Job: Postdoctoral Fellowship in Statistical Genetics and Genomics at the University of Michigan
genetics job biostatistics genomics bioinformatics Job
6.0 years ago xzhousph • 0
1
vote
3
replies
2.1k
views
Gene ID Duplicates
deseq2 genetics Tutorial
updated 6.1 years ago by 65k • written 6.1 years ago by • 0
0
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4
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13k
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Normalization by DEseq
Genetics Normalization DESeq Genetics Normalization DESeq
updated 6.2 years ago by • 0 • written 13.5 years ago by ▴ 20
0
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0
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1.4k
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fisher exact test pairwise associations between gene mutations
genetics
6.7 years ago wasmetqall • 0
0
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0
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1.6k
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Job: Research Co-ordinator (Full Time)
genetics obesity molecular biology biomedical science Job
6.7 years ago njc65 • 0
0
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0
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1.2k
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Job: Research Fellow or Junior Research Fellow, Statistical Genetics and Genomics, Australia
biostatistics genetics Job
7.0 years ago hong.lee • 0
0
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0
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1.5k
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Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
7.2 years ago • updated 7.0 years ago Luo Weijun ★ 1.6k
0
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0
replies
1.5k
views
Job: Postdoctoral Research Associate, Wellcome Trust-MRC Institute of Metabolic Science (Fixed Term)
genetics job genomics postdoc obesity Job
7.2 years ago njc65 • 0
0
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1
reply
1.2k
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Extension to GoogleGenomics: getVariantCalls
GoogleGenomics genetics variants
7.2 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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1.7k
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Job: Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer sequencing genetics genomes diagnostic Job
7.6 years ago dtlabmskcc • 0
0
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0
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949
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What statistical test is appropriate? 2 categorical independent variables, 3 categorical dependent variables, biological replicates
genetics
7.7 years ago efoss ▴ 10
0
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0
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1.1k
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homologue gene conversion worm to human
biomaRt homologue annotation genetics
7.7 years ago Nemo ▴ 80
0
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0
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974
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Genetic Association analysis using four siblings among which three were affected and one was normal
genetics plink linkage disequilibrium
7.8 years ago li lilingdu ▴ 450
2
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0
replies
1.4k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
7.9 years ago enridomenici ▴ 10
1
vote
1
reply
1.5k
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Question about EAGenes (TCGAbiolinks)
annotation cancer biomart genetics R
updated 8.1 years ago by ▴ 260 • written 8.1 years ago by • 0
1
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12
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3.3k
views
Problem running summarizeOverlaps()
Genetics Genetics
updated 8.2 years ago by ▴ 10 • written 9.9 years ago by ▴ 140
0
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0
replies
1.6k
views
Job: Calling all Clinical Genomic Scientist
computational biology genomics genetics Python java Job
8.8 years ago careers • 0
0
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0
replies
1.5k
views
Job: Come apply for our Epidemiologist, AncestryHealth role
genomics genetics design statistics scientist Job
8.8 years ago careers • 0
2
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0
replies
1.9k
views
Job: 23andMe Job Opportunities
bioinformatician job bioinformatics scientist genetics Job
9.0 years ago rgentleman ★ 5.5k
1
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0
replies
2.0k
views
Job: Bioinformatics / Biostatistics in genetic interaction analysis
high-throughput screening interactions genetics jobs image analysis Job
9.0 years ago Bernd Fischer ▴ 550
3
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5
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2.3k
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How to Find Common Dysregulated Genes in Two or More Sets of Microarray Data?
disease genetics micro array data microarray
updated 9.1 years ago by 50k • written 9.1 years ago by ▴ 20
0
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0
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2.1k
views
Job: Abbvie -- Senior Manager/Associate Director, Exploratory Statistics
genomics genetics proteomics rnaseq microarray Job
9.1 years ago Feng Hong • 0
0
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1
reply
3.8k
views
DESeq2 - factor base level changes the DE genes.
RNASeq Genetics DESeq2 RNASeq Genetics DESeq2
updated 9.5 years ago by 41k • written 9.8 years ago by ★ 13k
1
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1
reply
1.6k
views
Question about decideTestsDGE()
Genetics edgeR
updated 9.6 years ago by 50k • written 9.7 years ago by ▴ 250
2
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0
replies
2.2k
views
Job: Job Opening: Computational Biologist @ Genentech Bioinformatics
Job Sequencing Genetics Cancer
updated 9.6 years ago by ★ 8.2k • written 9.6 years ago by ★ 11k
0
votes
3
replies
2.0k
views
Error running makeTranscriptDbFromGFF in GenomicFeatures
Genetics TranscriptDb GenomicFeatures
updated 9.6 years ago by ★ 11k • written 9.6 years ago by ▴ 250
0
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0
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2.2k
views
Plot exon number per gene and transcript lengths
Genetics TranscriptDb GenomicFeatures
9.6 years ago Jon Bråte ▴ 250
0
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8
replies
2.8k
views
Expected number of DE genes?
Genetics edgeR DESeq2 Genetics edgeR DESeq2
updated 9.8 years ago by ▴ 750 • written 9.8 years ago by ▴ 140
0
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2
replies
1.3k
views
Can my problem be addressed with Bioconductor?
Genetics GOstats SNPchip topGO Genetics GOstats SNPchip topGO
updated 9.9 years ago by 65k • written 9.9 years ago by ★ 13k
0
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2
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2.0k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics GO Regression Cancer TranscriptDb Genetics GO Regression Cancer TranscriptDb
updated 9.9 years ago by ▴ 570 • written 9.9 years ago by 16k
0
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1
reply
1.7k
views
limma: percent of variance explained
Genetics limma Genetics limma
updated 9.9 years ago by 50k • written 9.9 years ago by ▴ 90
0
votes
2
replies
1.3k
views
RNA-seq pathway analysis in Canis familiaris
RNASeq Genetics Annotation Canis familiaris gage RNASeq Genetics Annotation gage
updated 9.9 years ago by 65k • written 10.0 years ago by ▴ 140
50 results • Page 1 of 1
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions by JKim • 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by James W. MacDonald 65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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