Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Genetics
•
reset
0
votes
0
replies
236
views
accesing gene name RNAseq
genetics
GeneticsPed
Genetics
5 months ago
Gülsüm
• 0
0
votes
0
replies
336
views
Job:
Bioinformatics Research Associate, Genomics and Genetics
genomes
Genetics
5 months ago
JP Carter
▴ 40
0
votes
3
replies
633
views
Multiple Testing When Using Multiple Contrasts/Comparisons in DESEQ2
MultipleComparison
DESeq2
Genetics
contrasts
RNASeq
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
a26fd14e
• 0
3
votes
5
replies
903
views
calculate distance to a certain sequence in one gene
SummarizedExperiment
Genetics
updated 12 months ago by
James W. MacDonald
65k • written 12 months ago by
Marcus
• 0
0
votes
0
replies
859
views
Job:
Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's
StatisticalMethod
Genetics
molecularQTL
FunctionalGenomics
19 months ago
gaow
• 0
0
votes
0
replies
875
views
Job:
Scientist/Senior Scientist, Statistical Geneticist
Sequencing
Genetics
GeneticsPed
statistics
3.3 years ago
António Miguel de Jesus Domingues
▴ 490
0
votes
0
replies
1.1k
views
Job:
R programmer position in genetic epidemiology/bioconductor
genetics
genomics
software
Job
3.5 years ago
Vincent J. Carey, Jr.
6.7k
2
votes
0
replies
1.2k
views
Job:
developer/project management position at Harvard Medical School
softwaredevelopment
Job
job
cloudcomputing
genetics
3.6 years ago • updated 3.2 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
1.9k
views
Job:
Postdoc and PhD student in Bioinformatics/Biostatistics
genomics
NGS
R
genetics
statistics
5.8 years ago • updated 3.4 years ago
Luo Weijun
★ 1.6k
3
votes
6
replies
1.1k
views
Extremely big genes in annotation TxDb packages
annotation
txdb
AnnotationData
Genetics
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
epibio
▴ 10
0
votes
1
reply
1.2k
views
DiffBind - Counting reads - counts not found
diffbind
differential analysis
genetics
#chip-seq
updated 5.1 years ago by
Rory Stark
★ 5.1k • written 5.1 years ago by
ryclb22
• 0
0
votes
0
replies
916
views
Job:
Computational Biology / Genomics Internship at Denali Therapeutics
internship
genomics
genetics
Job
5.2 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
749
views
package for mismatch distribution?
genetics
statistics
5.2 years ago
myriam.croze07
• 0
1
vote
0
replies
1.1k
views
Job:
2 Postdoc and 2 PhD positions in Regulatory genomics / Rare disease Gagneur lab, TU Munich
genomics
genetics
machine learning
Job
5.5 years ago
gagneur
▴ 10
0
votes
1
reply
1.0k
views
Normalization and Quality Control for Multiple scRNAseq Data Sets
normalization
rnaseq
genetics
batch effect
dropout
updated 5.5 years ago by
Steve Lianoglou
★ 13k • written 5.5 years ago by
lmm278
• 0
0
votes
1
reply
1.6k
views
Get Gene IDs for a list of Gene Names in R
r
bioinformatics
org.Hs.eg.db
genetics
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
Bayram Sarilmaz
• 0
1
vote
1
reply
951
views
co-evolution analysis for RNA
genetics
5.9 years ago
tg369
▴ 40
2
votes
0
replies
1.2k
views
Job:
Statistical Geneticist at Denali Therapeutics, South San Francisco, CA, USA
job
genetics
drug development
neurodegeneration
Job
5.9 years ago
sandmann.t
▴ 70
0
votes
0
replies
1.2k
views
Job:
Postdoctoral Fellowship in Statistical Genetics and Genomics at the University of Michigan
genetics
job
biostatistics
genomics
bioinformatics
Job
6.0 years ago
xzhousph
• 0
1
vote
3
replies
2.1k
views
Gene ID Duplicates
deseq2
genetics
Tutorial
updated 6.0 years ago by
James W. MacDonald
65k • written 6.0 years ago by
anokhi1997
• 0
0
votes
4
replies
13k
views
Normalization by DEseq
Genetics
Normalization
DESeq
Genetics
Normalization
DESeq
updated 6.1 years ago by
diannedai
• 0 • written 13.5 years ago by
Rui Luo
▴ 20
0
votes
0
replies
1.4k
views
fisher exact test pairwise associations between gene mutations
genetics
6.6 years ago
wasmetqall
• 0
0
votes
0
replies
1.6k
views
Job:
Research Co-ordinator (Full Time)
genetics
obesity
molecular biology
biomedical science
Job
6.7 years ago
njc65
• 0
0
votes
0
replies
1.2k
views
Job:
Research Fellow or Junior Research Fellow, Statistical Genetics and Genomics, Australia
biostatistics
genetics
Job
6.9 years ago
hong.lee
• 0
0
votes
0
replies
1.5k
views
Job:
Research Scientist in Biostatistics/Bioinformatics
statistics
genetics
genomics
R
Job
7.2 years ago • updated 7.0 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.5k
views
Job:
Postdoctoral Research Associate, Wellcome Trust-MRC Institute of Metabolic Science (Fixed Term)
genetics
job
genomics
postdoc
obesity
Job
7.1 years ago
njc65
• 0
0
votes
1
reply
1.2k
views
Extension to GoogleGenomics: getVariantCalls
GoogleGenomics
genetics
variants
7.2 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
1.7k
views
Job:
Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer
sequencing
genetics
genomes
diagnostic
Job
7.6 years ago
dtlabmskcc
• 0
0
votes
0
replies
944
views
What statistical test is appropriate? 2 categorical independent variables, 3 categorical dependent variables, biological replicates
genetics
7.7 years ago
efoss
▴ 10
0
votes
0
replies
1.1k
views
homologue gene conversion worm to human
biomaRt
homologue
annotation
genetics
7.7 years ago
Nemo
▴ 80
0
votes
0
replies
967
views
Genetic Association analysis using four siblings among which three were affected and one was normal
genetics
plink
linkage disequilibrium
7.8 years ago
li lilingdu
▴ 450
2
votes
0
replies
1.4k
views
Job:
Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job
GWAS
genetics
genomics
neuro
Job
7.8 years ago
enridomenici
▴ 10
1
vote
1
reply
1.5k
views
Question about EAGenes (TCGAbiolinks)
annotation
cancer
biomart
genetics
R
updated 8.1 years ago by
Tiago Chedraoui Silva
▴ 260 • written 8.1 years ago by
pathkim
• 0
1
vote
12
replies
3.3k
views
Problem running summarizeOverlaps()
Genetics
Genetics
updated 8.2 years ago by
shania90.lk
▴ 10 • written 9.9 years ago by
Jessica Perry Hekman
▴ 140
0
votes
0
replies
1.6k
views
Job:
Calling all Clinical Genomic Scientist
computational biology
genomics
genetics
Python
java
Job
8.8 years ago
careers
• 0
0
votes
0
replies
1.5k
views
Job:
Come apply for our Epidemiologist, AncestryHealth role
genomics
genetics
design
statistics
scientist
Job
8.8 years ago
careers
• 0
2
votes
0
replies
1.9k
views
Job:
23andMe Job Opportunities
bioinformatician job
bioinformatics scientist
genetics
Job
9.0 years ago
rgentleman
★ 5.5k
1
vote
0
replies
2.0k
views
Job:
Bioinformatics / Biostatistics in genetic interaction analysis
high-throughput screening
interactions
genetics
jobs
image analysis
Job
9.0 years ago
Bernd Fischer
▴ 550
3
votes
5
replies
2.2k
views
How to Find Common Dysregulated Genes in Two or More Sets of Microarray Data?
disease
genetics
micro array data
microarray
updated 9.0 years ago by
Gordon Smyth
50k • written 9.0 years ago by
pankajnarula84
▴ 20
0
votes
0
replies
2.1k
views
Job:
Abbvie -- Senior Manager/Associate Director, Exploratory Statistics
genomics
genetics
proteomics
rnaseq
microarray
Job
9.1 years ago
Feng Hong
• 0
0
votes
1
reply
3.8k
views
DESeq2 - factor base level changes the DE genes.
RNASeq
Genetics
DESeq2
RNASeq
Genetics
DESeq2
updated 9.5 years ago by
Michael Love
41k • written 9.8 years ago by
Guest User
★ 13k
1
vote
1
reply
1.6k
views
Question about decideTestsDGE()
Genetics
edgeR
updated 9.6 years ago by
Gordon Smyth
50k • written 9.7 years ago by
Jon Bråte
▴ 250
2
votes
0
replies
2.2k
views
Job:
Job Opening: Computational Biologist @ Genentech Bioinformatics
Job
Sequencing
Genetics
Cancer
updated 9.6 years ago by
Dan Tenenbaum
★ 8.2k • written 9.6 years ago by
Michael Lawrence
★ 11k
0
votes
3
replies
2.0k
views
Error running makeTranscriptDbFromGFF in GenomicFeatures
Genetics
TranscriptDb
GenomicFeatures
updated 9.6 years ago by
Michael Lawrence
★ 11k • written 9.6 years ago by
Jon Bråte
▴ 250
0
votes
0
replies
2.2k
views
Plot exon number per gene and transcript lengths
Genetics
TranscriptDb
GenomicFeatures
9.6 years ago
Jon Bråte
▴ 250
0
votes
8
replies
2.8k
views
Expected number of DE genes?
Genetics
edgeR
DESeq2
Genetics
edgeR
DESeq2
updated 9.8 years ago by
Thomas Hampton
▴ 750 • written 9.8 years ago by
Jessica Perry Hekman
▴ 140
0
votes
2
replies
1.3k
views
Can my problem be addressed with Bioconductor?
Genetics
GOstats
SNPchip
topGO
Genetics
GOstats
SNPchip
topGO
updated 9.8 years ago by
James W. MacDonald
65k • written 9.8 years ago by
Guest User
★ 13k
0
votes
2
replies
2.0k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics
GO
Regression
Cancer
TranscriptDb
Genetics
GO
Regression
Cancer
TranscriptDb
updated 9.9 years ago by
Tarca, Adi
▴ 570 • written 9.9 years ago by
Hervé Pagès
16k
0
votes
1
reply
1.7k
views
limma: percent of variance explained
Genetics
limma
Genetics
limma
updated 9.9 years ago by
Gordon Smyth
50k • written 9.9 years ago by
Julien Roux
▴ 90
0
votes
2
replies
1.3k
views
RNA-seq pathway analysis in Canis familiaris
RNASeq
Genetics
Annotation
Canis familiaris
gage
RNASeq
Genetics
Annotation
gage
updated 9.9 years ago by
James W. MacDonald
65k • written 9.9 years ago by
Jessica Perry Hekman
▴ 140
50 results • Page
1 of 1
Recent ...
Replies
Comment: Finding DEGs by using edgeR
by
Gordon Smyth
50k
Filtering (removing lowly expressed genes) is separate to normalization. It isn't clear why not subsetting would cause any difficulty. It …
Comment: How to make DGEList and design matrix by edgeR package
by
prity6459
• 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR
by
prity6459
• 0
Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…
Answer: How to make DGEList and design matrix by edgeR package
by
Gordon Smyth
50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
Votes
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Awards
• All
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Popular Question
to
sropri
• 0
Popular Question
to
W. Evan Johnson
▴ 850
Popular Question
to
Alejandro Reyes
★ 1.9k
Locations
• All
Wageningen University, Wageningen, the Netherlands,
5 minutes ago
Hong Kong,
9 minutes ago
France,
9 minutes ago
WEHI, Melbourne, Australia,
11 minutes ago
France,
14 minutes ago
Traffic: 868 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6