Showing : Genetics • reset
3
votes
6
replies
1.1k
views
Extremely big genes in annotation TxDb packages
annotation txdb AnnotationData Genetics
updated 3.8 years ago by 65k • written 3.8 years ago by ▴ 10
3
votes
5
replies
917
views
calculate distance to a certain sequence in one gene
SummarizedExperiment Genetics
updated 12 months ago by 65k • written 12 months ago by • 0
3
votes
5
replies
2.3k
views
How to Find Common Dysregulated Genes in Two or More Sets of Microarray Data?
disease genetics micro array data microarray
updated 9.1 years ago by 50k • written 9.1 years ago by ▴ 20
2
votes
0
replies
1.2k
views
Job: Statistical Geneticist at Denali Therapeutics, South San Francisco, CA, USA
job genetics drug development neurodegeneration Job
5.9 years ago sandmann.t ▴ 70
2
votes
0
replies
1.9k
views
Job: 23andMe Job Opportunities
bioinformatician job bioinformatics scientist genetics Job
9.0 years ago rgentleman ★ 5.5k
2
votes
0
replies
1.2k
views
Job: developer/project management position at Harvard Medical School
softwaredevelopment Job job cloudcomputing genetics
3.6 years ago • updated 3.2 years ago Vincent J. Carey, Jr. 6.7k
2
votes
0
replies
2.2k
views
Job: Job Opening: Computational Biologist @ Genentech Bioinformatics
Job Sequencing Genetics Cancer
updated 9.6 years ago by ★ 8.2k • written 9.6 years ago by ★ 11k
2
votes
7
replies
4.9k
views
Extend GRanges start/end
Genetics GenomicFeatures Genetics GenomicFeatures
updated 11.5 years ago by ★ 11k • written 11.5 years ago by ▴ 490
2
votes
0
replies
1.4k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
7.9 years ago enridomenici ▴ 10
1
vote
3
replies
2.1k
views
Gene ID Duplicates
deseq2 genetics Tutorial
updated 6.1 years ago by 65k • written 6.1 years ago by • 0
1
vote
1
reply
958
views
co-evolution analysis for RNA
genetics
5.9 years ago tg369 ▴ 40
1
vote
12
replies
3.3k
views
Problem running summarizeOverlaps()
Genetics Genetics
updated 8.2 years ago by ▴ 10 • written 9.9 years ago by ▴ 140
1
vote
0
replies
2.0k
views
Job: Bioinformatics / Biostatistics in genetic interaction analysis
high-throughput screening interactions genetics jobs image analysis Job
9.0 years ago Bernd Fischer ▴ 550
1
vote
0
replies
1.1k
views
Job: 2 Postdoc and 2 PhD positions in Regulatory genomics / Rare disease Gagneur lab, TU Munich
genomics genetics machine learning Job
5.5 years ago gagneur ▴ 10
1
vote
3
replies
3.5k
views
Limma: correct calculation of B statistics (log odds)
Microarray Genetics limma limmaGUI Microarray Genetics limma limmaGUI
updated 18.0 years ago by ★ 1.9k • written 18.0 years ago by 50k
1
vote
1
reply
1.6k
views
Question about decideTestsDGE()
Genetics edgeR
updated 9.6 years ago by 50k • written 9.7 years ago by ▴ 250
1
vote
1
reply
1.5k
views
Question about EAGenes (TCGAbiolinks)
annotation cancer biomart genetics R
updated 8.1 years ago by ▴ 260 • written 8.1 years ago by • 0
0
votes
0
replies
1.3k
views
job advertisement
Genetics Alignment Visualization Genetics Alignment Visualization
10.8 years ago Zhenyu Xu ▴ 10
0
votes
0
replies
1.6k
views
Bioinformatician Job at Pirbright Institute
Genetics Infrastructure Genetics Infrastructure
11.4 years ago Jan T Kim ▴ 50
0
votes
3
replies
1.4k
views
Bioconductor Digest, Vol 66, Issue 2 Message 7 (apologies; long and veering off topic)
Genetics Annotation Genetics Annotation
updated 15.7 years ago by ▴ 910 • written 15.7 years ago by ▴ 90
0
votes
1
reply
2.0k
views
estimateDispersions in DESeq
Genetics graph DESeq Genetics graph DESeq
updated 11.8 years ago by ★ 13k • written 11.9 years ago by ▴ 10
0
votes
0
replies
764
views
HTTP POST in R, Unigene
Genetics Genetics
21.0 years ago James Wettenhall ▴ 1000
0
votes
1
reply
945
views
getBioC problem: reposTools
Genetics reposTools Genetics reposTools
updated 21.1 years ago by ★ 3.9k • written 21.1 years ago by ▴ 1000
0
votes
0
replies
1.7k
views
Deferential gene expression databases
Microarray Genetics Annotation Normalization Pathways GO Cancer BSgenome probe annotate
12.2 years ago saikouy bah ▴ 30
0
votes
1
reply
1.2k
views
ReadAffy problems
Genetics Biophysics affy Genetics Biophysics affy
updated 21.0 years ago by ★ 2.3k • written 21.0 years ago by ▴ 30
0
votes
1
reply
1.2k
views
R: Degradation plots - Affy package
Transcription qPCR Genetics probe affy Transcription qPCR Genetics probe affy
updated 17.6 years ago by ▴ 360 • written 17.6 years ago by ▴ 10
0
votes
1
reply
801
views
Bug in Biobase 1.3.22
Genetics Genetics
updated 20.9 years ago by ★ 3.9k • written 20.9 years ago by ▴ 10
0
votes
0
replies
703
views
position available
Genetics Genetics
20.8 years ago Joanne Chory ▴ 10
0
votes
1
reply
1.3k
views
Re: Single channel normalization
Genetics Normalization GO limma Genetics Normalization GO limma
updated 20.6 years ago by ▴ 60 • written 20.6 years ago by ▴ 30
0
votes
1
reply
927
views
Problems with hgu133acdf...!
Genetics cdf probe affy Genetics cdf probe affy
updated 20.6 years ago by 65k • written 20.6 years ago by ▴ 30
0
votes
0
replies
870
views
MolPAGE Training Workshop on Causal Inference - 19-21 May 2008
Genetics Regression Genetics Regression
16.2 years ago Brian D M Tom ▴ 50
0
votes
1
reply
1.3k
views
[R] Why SAM has totally diffent results in R2.1.1 and R2.4.0
Microarray Genetics Survival multtest siggenes safe Microarray Genetics Survival multtest
updated 17.4 years ago by ▴ 900 • written 17.4 years ago by 25k
0
votes
0
replies
906
views
Job Advertisement
Genetics Cancer Breast Genetics Cancer Breast
21.2 years ago rgentleman ★ 5.5k
0
votes
2
replies
1.4k
views
gls from nlme package not compatible with methods package
Microarray Genetics Microarray Genetics
updated 21.3 years ago by ▴ 180 • written 21.3 years ago by ▴ 1000
0
votes
0
replies
2.5k
views
Postdoctoral Fellow - Bioinformatics - Singapore, IMCB, Biopolis
Genetics Metabolomics Pathways Cancer Genetics Metabolomics Pathways Cancer
12.6 years ago Emilie Bard ▴ 10
0
votes
1
reply
779
views
vsn / rma
Genetics vsn Genetics vsn
updated 21.4 years ago by ★ 13k • written 21.4 years ago by ▴ 30
0
votes
3
replies
1.2k
views
GO analysis
Genetics Annotation GO Genetics Annotation GO
updated 20.4 years ago by ★ 1.1k • written 20.4 years ago by ▴ 100
0
votes
0
replies
1.1k
views
BioC GUI development
Microarray Genetics GUI affy limma affylmGUI limmaGUI Microarray Genetics GUI affy
20.4 years ago James Wettenhall ▴ 1000
0
votes
2
replies
1.1k
views
multtest library load problem
Genetics Cancer Genetics Cancer
updated 21.9 years ago by ▴ 280 • written 21.9 years ago by ▴ 10
0
votes
0
replies
1.4k
views
PhD student in Quantitative Genetic Models of Complex Traits
Sequencing Genetics Drosophila melanogaster Sequencing Genetics Drosophila melanogaster
11.2 years ago Peter Sørensen (HAG) ▴ 60
0
votes
0
replies
1.5k
views
John Innes Centre, UK - Statistician Position
Genetics Metabolomics Genetics Metabolomics
20.4 years ago david lowe JIC ▴ 10
0
votes
0
replies
626
views
Position Available. Genomics Core
Genetics Genetics
20.2 years ago Michael McClelland ▴ 10
0
votes
0
replies
993
views
Re: LimmaGUI
Genetics limma limmaGUI Genetics limma limmaGUI
20.2 years ago James Wettenhall ▴ 1000
0
votes
0
replies
776
views
missing MAP locations for hgu133plus2 annotation
Genetics Annotation hgu133plus2 Genetics Annotation hgu133plus2
20.2 years ago Srikanth ▴ 40
0
votes
0
replies
655
views
memory
Genetics Genetics
20.1 years ago Joshi, Nina NIH/NCI ▴ 40
0
votes
3
replies
1.4k
views
package simpleaffy
Genetics affy simpleaffy Genetics affy simpleaffy
updated 20.1 years ago by ★ 3.9k • written 20.1 years ago by ▴ 20
0
votes
0
replies
697
views
CELfiles names in a matrix
Genetics Genetics
20.1 years ago Joshi, Nina NIH/NCI ▴ 40
0
votes
0
replies
876
views
CELfiles names in a matrix
Microarray Genetics Cancer Microarray Genetics Cancer
20.1 years ago James W. MacDonald 65k
0
votes
0
replies
986
views
[JOB] Computational Statistician
Genetics Genetics
20.0 years ago Warnes, Gregory R ▴ 460
0
votes
1
reply
2.8k
views
BIRD 2008
Genetics Pathways Cancer PROcess microRNA a4 Genetics Pathways Cancer PROcess microRNA
16.5 years ago Prof. Roland Wagner ▴ 100
50 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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