Bioconductor Genome

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156

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ensembldb transcriptome genome coordinateconversion

updated 24 days ago by Michael Love 41k • written 27 days ago by saadmurtazakhan ▴ 10

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647

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build genome

13 months ago Dmitry • 0

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1.9k

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Genome bwamem ChIPSeqData index

updated 14 months ago by ATpoint ★ 4.0k • written 14 months ago by Maka • 0

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987

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Alignment Genome

2.5 years ago Charles Plessy ▴ 180

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1.2k

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Genome readVcf VariantAnnotation

3.1 years ago naive • 0

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1.1k

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Genome GWASdata

3.2 years ago Jocelyn • 0

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983

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.2 years ago by kayla.interdonato ▴ 160 • written 4.2 years ago by jam526 • 0

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1.0k

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Gviz R UCSC Tracks genome locusplot

updated 4.5 years ago by Robert Ivanek ▴ 730 • written 4.5 years ago by s.koturan • 0

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911

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single cell bioinformatics genome sequencing Job

4.6 years ago jmaanaki • 0

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1.9k

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annotation gff3 gff genome

updated 4.6 years ago by Michael Lawrence ★ 11k • written 4.6 years ago by mictadlo ▴ 10

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2.6k

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txdb genome exons

updated 4.7 years ago by Martin Morgan 25k • written 4.7 years ago by Bogdan ▴ 670

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843

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single cell genome cancer Job

4.9 years ago jmaanaki • 0

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874

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genome novel package release

updated 5.2 years ago by James W. MacDonald 65k • written 5.2 years ago by pertille • 0

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1.1k

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multiplealignment genome

5.6 years ago Giuseppe ▴ 20

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1.2k

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r build genome chicken-sheme

8.5 years ago pertille • 0

15 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…

Answer: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Votes

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0