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Genome
•
reset
4
votes
2
replies
617
views
A way to find which genome builds a package supports
build
genome
12 months ago
Dmitry
• 0
0
votes
1
reply
1.8k
views
bwa mem2 index genome - chipseq analysis
Genome
bwamem
ChIPSeqData
index
updated 13 months ago by
ATpoint
★ 4.0k • written 13 months ago by
Maka
• 0
0
votes
2
replies
928
views
BLAST-like alignment of a DNAString to a BSgenome?
Alignment
Genome
2.5 years ago • updated 2.4 years ago
Charles Plessy
▴ 180
0
votes
2
replies
1.2k
views
readVCF requires the argument "genome". What does it stand for?
Genome
readVcf
VariantAnnotation
3.0 years ago
naive
• 0
0
votes
0
replies
1.0k
views
Using R to compare whole genome sequences/FASTA files to find percent difference
Genome
GWASdata
3.1 years ago
Jocelyn
• 0
2
votes
4
replies
949
views
Help with Missing Gene from hg38
annotation
genome
hg38
TxDb.Hsapiens.UCSC.hg38.knownGene
BSgenome.Hsapiens.UCSC.hg38
updated 4.1 years ago by
kayla.interdonato
▴ 160 • written 4.1 years ago by
jam526
• 0
1
vote
1
reply
1.0k
views
Gviz UCSC tracks not visible
Gviz
R
UCSC Tracks
genome
locusplot
updated 4.4 years ago by
Robert Ivanek
▴ 730 • written 4.4 years ago by
s.koturan
• 0
0
votes
0
replies
885
views
Job:
Post-doc fellow - Aparicio Lab
single cell
bioinformatics
genome
sequencing
Job
4.5 years ago
jmaanaki
• 0
2
votes
2
replies
1.8k
views
Filtering GFF3 file
annotation
gff3
gff
genome
updated 4.6 years ago by
Michael Lawrence
★ 11k • written 4.6 years ago by
mictadlo
▴ 10
6
votes
4
replies
2.6k
views
the coordinates of exons of RefSeq or ENSEMBL genes
txdb
genome
exons
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
Bogdan
▴ 670
0
votes
0
replies
819
views
Job:
Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell
genome
cancer
Job
4.8 years ago
jmaanaki
• 0
1
vote
2
replies
860
views
Gallus gallus package genome update release
genome
novel
package
release
updated 5.1 years ago by
James W. MacDonald
65k • written 5.1 years ago by
pertille
• 0
0
votes
2
replies
1.1k
views
Multiple alignment of big DNA sequences files
multiplealignment
genome
5.5 years ago
Giuseppe
▴ 20
2
votes
3
replies
1.2k
views
Building a reduced BSgenome.Gallus.UCSC.galGal 4 from Bioconductor
r
build
genome
chicken-sheme
8.4 years ago
pertille
• 0
14 results • Page
1 of 1
Recent ...
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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James W. MacDonald
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Pierre Lindenbaum
▴ 10
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Gordon Smyth
50k
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to
Jenny Drnevich
★ 2.0k
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