Showing : Genome • reset
6
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4
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2.6k
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the coordinates of exons of RefSeq or ENSEMBL genes
txdb genome exons
updated 4.7 years ago by 25k • written 4.7 years ago by ▴ 670
4
votes
2
replies
636
views
A way to find which genome builds a package supports
build genome
13 months ago Dmitry • 0
2
votes
2
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1.9k
views
Filtering GFF3 file
annotation gff3 gff genome
updated 4.6 years ago by ★ 11k • written 4.6 years ago by ▴ 10
2
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3
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1.2k
views
Building a reduced BSgenome.Gallus.UCSC.galGal 4 from Bioconductor
r build genome chicken-sheme
8.5 years ago pertille • 0
2
votes
4
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976
views
Help with Missing Gene from hg38
annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38
updated 4.2 years ago by ▴ 160 • written 4.2 years ago by • 0
1
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1
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1.0k
views
Gviz UCSC tracks not visible
Gviz R UCSC Tracks genome locusplot
updated 4.5 years ago by ▴ 730 • written 4.5 years ago by • 0
1
vote
2
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867
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Gallus gallus package genome update release
genome novel package release
updated 5.2 years ago by 65k • written 5.2 years ago by • 0
0
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0
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901
views
Job: Post-doc fellow - Aparicio Lab
single cell bioinformatics genome sequencing Job
4.6 years ago jmaanaki • 0
0
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0
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833
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Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
4.9 years ago jmaanaki • 0
0
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0
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1.1k
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Using R to compare whole genome sequences/FASTA files to find percent difference
Genome GWASdata
3.2 years ago Jocelyn • 0
0
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2
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1.2k
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readVCF requires the argument "genome". What does it stand for?
Genome readVcf VariantAnnotation
3.1 years ago naive • 0
0
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1
reply
1.9k
views
bwa mem2 index genome - chipseq analysis
Genome bwamem ChIPSeqData index
updated 13 months ago by ★ 4.0k • written 13 months ago by • 0
0
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2
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976
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BLAST-like alignment of a DNAString to a BSgenome?
Alignment Genome
2.5 years ago Charles Plessy ▴ 180
0
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2
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1.1k
views
Multiple alignment of big DNA sequences files
multiplealignment genome
5.6 years ago Giuseppe ▴ 20
0
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1
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146
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Convert transcriptomic bam to genomic bam?
ensembldb transcriptome genome coordinateconversion
updated 17 days ago by 41k • written 20 days ago by ▴ 10
15 results • Page 1 of 1
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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