Showing : GenomeInfoDb • reset
0
votes
1
reply
123
views
package ‘GenomeInfoDb’ could not be loaded
GenomeInfoDb GenomeInfoDbData
updated 3 months ago by ★ 2.9k • written 3 months ago by • 0
16
votes
10
replies
5.1k
views
Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
GenomeInfoDb
updated 4 months ago by 16k • written 19 months ago by ▴ 20
1
vote
3
replies
1.4k
views
Unable to GetGRangesFromEnsDb
single GenomeInfoDb
updated 5 months ago by • 0 • written 16 months ago by • 0
1
vote
5
replies
662
views
Unable to load mm10 genome for use with GenomicDistributions package
GenomeInfoDb GenomeInfoDbData GenomicDistributionsData GenomicDistributions
11 months ago rashford • 0
0
votes
1
reply
649
views
GenomeInfoDbData cannot install in R and warning had non-zero exit status
GenomeInfoDb
updated 14 months ago by 63k • written 14 months ago by • 0
1
vote
4
replies
635
views
seqinfo got changed after `library(rtracklayer)`
rtracklayer GenomeInfoDb
18 months ago • updated 17 months ago Ge Tan ▴ 20
3
votes
2
replies
710
views
Please allow integers in `numeric` format in `seqlengths`
GenomeInfoDb
updated 18 months ago by 16k • written 18 months ago by ▴ 170
0
votes
3
replies
767
views
Permanent error in installing GenomeInfoDb
GenomeInfoDb
18 months ago AZ ▴ 30
0
votes
2
replies
1.4k
views
GenomeInfoDb fails to install
zip GenomeInfoDb
updated 21 months ago by 660 • written 21 months ago by • 0
3
votes
2
replies
3.1k
views
Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m31) is not TRUE
GenomeInfoDb
updated 23 months ago by ▴ 20 • written 23 months ago by ▴ 10
0
votes
0
replies
561
views
motifBreakR error with custom BSgenome
GenomeInfoDb motifbreakR
2.1 years ago Chris Seidel ▴ 80
3
votes
4
replies
2.1k
views
R Error: package ‘GenomeInfoDb’ could not be loaded on MacBook
error mac DESeq2 GenomeInfoDb R
2.4 years ago • updated 2.3 years ago Dan ▴ 20
0
votes
2
replies
653
views
Error in GenomeInfoDb:::makeNewSeqnames
GenomeInfoDb ggbio
2.4 years ago Konstantinos Yeles ▴ 80
0
votes
1
reply
408
views
RNA gene expression data retrieval for breast cancer subtypes
RNASeqData GenomeInfoDb
updated 2.5 years ago by 3.8k • written 2.5 years ago by • 0
2
votes
2
replies
973
views
How does one modify a single value of a field in a seqinfo object?
GenomicRanges GenomeInfoDb BSgenome isCircular
updated 2.6 years ago by 16k • written 2.7 years ago by ▴ 80
4
votes
3
replies
927
views
OrganismDbi throws error for Oryza Sativa indica org.db preparation
GenomeInfoDb OrganismDbi biomaRt
updated 2.6 years ago by 63k • written 2.6 years ago by ▴ 20
1
vote
2
replies
752
views
Error in csaw::windowCounts when using readParam
csaw GenomeInfoDb
updated 2.8 years ago by ★ 28k • written 2.8 years ago by ▴ 50
2
votes
3
replies
1.1k
views
Error "cannot map the following UCSC seqlevel(s) to an NCBI seqlevel" in package GenomeDbInfo
genomeinfodb hg19 ucsc seqlevel genomicfeatures
updated 3.2 years ago by 63k • written 3.2 years ago by ▴ 80
3
votes
5
replies
707
views
Information on genomic sequences via Seqinfo failing
GenomeInfoDb
updated 3.2 years ago by 16k • written 3.2 years ago by ★ 4.3k
0
votes
7
replies
2.0k
views
Assembly report error for hg19 in GenomeInfoDb
software error GenomeInfoDb HTGTS Transloc-pipeline TranslocHotspots.R
updated 2.2 years ago by ▴ 130 • written 3.7 years ago by • 0
8
votes
11
replies
2.4k
views
GenomeInfoDb's Seqinfo() error on hg38
genomeinfodb
updated 4.3 years ago by 16k • written 4.3 years ago by 40k
0
votes
1
reply
1.4k
views
Issue using ballgown
software error ballgown genomeinfodbdata genomeinfodb
updated 4.7 years ago by 63k • written 4.7 years ago by • 0
7
votes
5
replies
1.4k
views
Strange error in bsseq when trying to assign seqinfo
bsseq genomeinfodb genomicranges seqinfo
written 5.1 years ago by ▴ 140
1
vote
1
reply
753
views
seqnames versus chrom
BiocGen rtracklayer genomeinfodb
updated 5.4 years ago by 11k • written 5.4 years ago by • 0
0
votes
3
replies
5.5k
views
Trouble installing DESeq / GenomeInfoDb
deseq2 genomeinfodb
updated 5.8 years ago by 63k • written 5.8 years ago by • 0
0
votes
1
reply
1.1k
views
errotr in genome infodb
software error roar bioconductor genomeinfodb
5.9 years ago praveenhcu131 • 0
0
votes
1
reply
802
views
seqlevels/keepSeqLevels should set default pruning.mode by a getOption call
genomeinfodb
updated 6.0 years ago by 16k • written 6.0 years ago by ▴ 10
0
votes
1
reply
781
views
GenomeInfoDb: where are the genome patches?
seqnames genomeinfodb
updated 6.0 years ago by 16k • written 6.0 years ago by ▴ 10
0
votes
2
replies
861
views
seqlevelsStyle for chrY in Drosophila?
genomeinfodb dmel seqlevelsstyle
updated 6.0 years ago by ▴ 50 • written 6.0 years ago by ▴ 140
0
votes
7
replies
1.6k
views
regionMatrix for derfinder crashes with seqnames issue on non-human data
derfinder GenomeInfoDb GenomicRanges
6.1 years ago Wayne • 0
1
vote
3
replies
1.2k
views
GenomeInfoDb::Seqinfo() error 404 on the function
GenomeInfoDb Seqinfo 404 error
6.3 years ago bastien.herve • 0
3
votes
3
replies
2.4k
views
keepSeqlevels for GRangesList: drop elements with multiple seqnames
GenomeInfoDb keepSeqlevels
updated 6.5 years ago by ★ 6.8k • written 6.6 years ago by ▴ 30
4
votes
9
replies
3.5k
views
Is it possible to read bigwig files with rtracklayer over https? Comes down to GenomeInfoDb::seqinfo()
rtracklayer genomeinfodb
7.1 years ago Leonardo Collado Torres ★ 1.0k
8
votes
7
replies
2.8k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb
updated 7.4 years ago by 16k • written 7.4 years ago by ▴ 10
2
votes
5
replies
1.3k
views
GenomeInfoDb::extractSeqlevelsByGroup() on 'Canis familiaris'
genomeinfodb canis familiaris
updated 7.6 years ago by 16k • written 7.6 years ago by ★ 3.0k
0
votes
0
replies
1.0k
views
'GenomeInfoDb' error in the cn.MOPS Package
cnv genomeinfodb
7.9 years ago voksdvoks • 0
6
votes
2
replies
4.7k
views
Get sequences for GRCh38 genome based on TxDb object locations
bsgenome genomeinfodb transcriptdb
updated 8.5 years ago by 16k • written 8.5 years ago by ▴ 760
0
votes
4
replies
1.3k
views
keepStandardChromosomes doesn't respect ordering
genomeinfodb
updated 8.6 years ago by ▴ 380 • written 8.6 years ago by 63k
0
votes
2
replies
1.5k
views
GenomeinfoDB
Mus musculus GenomeInfoDb Mus musculus GenomeInfoDb
updated 8.9 years ago by ▴ 380 • written 8.9 years ago by ★ 12k
39 results • Page 1 of 1
Recent ...
Replies
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k
Perhaps you are thinking of data analyses where the dependent variable is something other than expression itself. In the context of gene e…
Comment: Interpret plot from DiffBind by Chris • 0
If I want to find genes that are more open in diseased than control, I can filter out peaks that have highest log2Fold change like this, is…
Comment: Interpret plot from DiffBind by Chris • 0
Hi Rory. There are so many red dot above and below the blue line so it is hard to know which condition are more open, is that correct? Is 1…
Comment: Extract Limma Adjusted Values for Plotting by phelankj • 0
Thanks, on the normalized values using the same formula?
Answer: Extract Limma Adjusted Values for Plotting by James W. MacDonald 63k
You should use `removeBatchEffect` for that.
Votes
Answer: NA transcript values in my Txdb
Comment: Interpret plot from DiffBind
Answer: Use with_go along with other filters in getBM function
Answer: Use with_go along with other filters in getBM function
Answer: Interpret plot from DiffBind
Awards • All
Scholar to Mike Smith ★ 6.0k
Popular Question to Martin Morgan 25k
Teacher to deeenes ▴ 30
Popular Question to Hervé Pagès 16k
Popular Question to Gordon Smyth 47k
Locations • All
Republic of Ireland, 21 minutes ago
United States, 26 minutes ago
WEHI, Melbourne, Australia, 38 minutes ago
Canada, 42 minutes ago
United States, 1 hour ago
Traffic: 218 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6