Bioconductor GenomeStudio

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 8.4 years ago by Stephanie M. Gogarten ▴ 870 • written 8.4 years ago by Lna • 0

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minfi genomestudio methylation

updated 7.4 years ago by James W. MacDonald 67k • written 7.4 years ago by brhead ▴ 40

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Comment: RNA-Seq p value range variation by paul.meraner • 0

Thanks - all I wanted to hear (and I believe that is what you are saying) is that it is not concerning if p value ranges between two very s…

Answer: RNA-Seq p value range variation by Michael Love 42k

The adjusted p-values are really just for thresholding at some value and giving you a bounded set. Whether it's 1e-10 or 1e-100, it's j…

Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20

Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …

Comment: miRTarRnaseq library by María Calvo • 0

Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…

Answer: heatmap with batch effect by James W. MacDonald 67k

You have only one condition in the second batch, so it's not possible to remove the batch effect. You can probably adjust for it somewhat, …

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