Bioconductor GenomicFiles

Showing : GenomicFiles • reset

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1.1k

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GenomicFiles BiocParallel

updated 6.8 years ago by shepherl 3.8k • written 6.9 years ago by m.van_iterson ▴ 20

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2.5k

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rsamtools genomicalignments genomicfiles

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by Welliton de Souza ▴ 70

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1.4k

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genomicfiles rsamtools

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by victoriaccorey ▴ 10

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1.3k

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rsamtools genomicalignments genomicfiles

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by jfiksel ▴ 30

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736

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GenomicFiles

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by Qiang ▴ 80

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1.1k

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genomicfiles reduceByRange

updated 6.6 years ago by Valerie Obenchain ★ 6.8k • written 6.6 years ago by maltethodberg ▴ 170

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963

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genomicfiles

updated 6.3 years ago by Martin Morgan 25k • written 6.3 years ago by Qiang ▴ 80

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603

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

2.8 years ago koushik • 0

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977

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GO Biostrings rtracklayer GenomicRanges BiocParallel GenomicFiles

9.6 years ago Dan Tenenbaum ★ 8.2k

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1.2k

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GenomicFiles ShortRead Rsamtools

3.2 years ago robmaz77 ▴ 20

10 results • Page 1 of 1

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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by Tim Peters ▴ 170

Hi Jose and Russ, Apologies to Jose for not seeing this earlier. Sometimes the loess smoother in the bottom panel will throw this error …

Comment: Trying to use enrichGO by fernanda.backsouza • 0

Sure, I changed it but still NULL G0 <- enrichGO( gene = ortologos_filtrados$Gene.ID, OrgDb = org.Cs.eg.db, keyType = "ENTREZID",…

Answer: limma-voom: Calculate the log-fold change in gene expression within a sample by Gordon Smyth 50k

No, you cannot use residuals to compute logFCs. From the information you give, I guess that you need to add individual-specific condition …

Comment: Error EPICv2 ChAMP by James W. MacDonald 65k

You don't need to do either of the above suggestions. ``` library(BiocManager) install("YuanTian1991/ChAMPdata") ``` will install without…

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Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

Answer: Differentially expressed genes in monocle pseudotime

Answer: DESeq2 - dispersion estimation when there is none

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Scholar to Gordon Smyth 50k