Bioconductor GenomicFiles

Showing : GenomicFiles • reset

votes

replies

601

views

GenomicInteractions Basic4Cseq DNASeq GenomicFiles

2.8 years ago koushik • 0

votes

replies

1.2k

views

GenomicFiles ShortRead Rsamtools

3.2 years ago robmaz77 ▴ 20

vote

replies

734

views

GenomicFiles

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by Qiang ▴ 80

votes

replies

955

views

genomicfiles

updated 6.3 years ago by Martin Morgan 25k • written 6.3 years ago by Qiang ▴ 80

votes

replies

1.1k

views

genomicfiles reduceByRange

updated 6.6 years ago by Valerie Obenchain ★ 6.8k • written 6.6 years ago by maltethodberg ▴ 170

votes

replies

1.1k

views

GenomicFiles BiocParallel

updated 6.8 years ago by shepherl 3.8k • written 6.9 years ago by m.van_iterson ▴ 20

votes

replies

1.3k

views

rsamtools genomicalignments genomicfiles

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by jfiksel ▴ 30

vote

1.4k

views

genomicfiles rsamtools

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by victoriaccorey ▴ 10

votes

replies

2.5k

views

rsamtools genomicalignments genomicfiles

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by Welliton de Souza ▴ 70

votes

replies

972

views

GO Biostrings rtracklayer GenomicRanges BiocParallel GenomicFiles

9.6 years ago Dan Tenenbaum ★ 8.2k

10 results • Page 1 of 1

Recent ...

Replies

Comment: DEG with low counts by Rajat • 0

Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…

Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k

To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…

Answer: flowStats Search Error by shepherl 3.8k

We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.

Comment: How to correct for known and surrogate variables in DESeq2? by nhaus ▴ 30

Hey Crystal, did you end up getting advice? I am facing the exact same questions that you are having right now. Would be very grateful if y…

Votes

Answer: Light difference when using coef vs omit a group when compare 3 groups.

C: Add new columns to DESeqResults from text file by matching rownames.

Answer: geneList error in clusterprofiler

Comment: Memory errors using read.bismark?

Comment: Not fully paired differential gene expression analysis

Awards • All