Showing : GenomicFiles • reset
2
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2
replies
2.1k
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How to randomly sample BAM files
rsamtools genomicalignments genomicfiles
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 70
1
vote
1
reply
1.1k
views
How to randomly sample bam files obtaining a subset of information (ex: binning locations)
genomicfiles rsamtools
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 10
4
votes
2
replies
1.0k
views
readGAlignmentPairs not working correctly when reading a bam file by chunks
rsamtools genomicalignments genomicfiles
updated 6.7 years ago by 16k • written 6.7 years ago by ▴ 30
3
votes
2
replies
852
views
Passing multiple arguments (like mapply) to the MAP-function in GenomicFiles.
genomicfiles reduceByRange
updated 5.6 years ago by ★ 6.7k • written 5.6 years ago by ▴ 160
3
votes
3
replies
824
views
Parallel reading of Vcfs using VcfStack/RangedVcfStack
GenomicFiles BiocParallel
updated 5.8 years ago by 3.4k • written 5.9 years ago by ▴ 20
0
votes
0
replies
791
views
[Bioc-devel] AnnotatioDbi Biostrings load order breaks GenomicFiles summary method
GO Biostrings rtracklayer GenomicRanges BiocParallel GenomicFiles
8.6 years ago Dan Tenenbaum ★ 8.2k
2
votes
6
replies
676
views
memory leak when subsampling BAM
GenomicFiles ShortRead Rsamtools
2.1 years ago robmaz77 ▴ 20
3
votes
2
replies
658
views
ranges input for GenomicFiles
genomicfiles
updated 5.3 years ago by 25k • written 5.3 years ago by ▴ 70
1
vote
2
replies
437
views
The metadata from rowRanges is missing in the MAP function of GenomicFiles.
GenomicFiles
updated 3.9 years ago by 25k • written 3.9 years ago by ▴ 70
0
votes
0
replies
301
views
Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions Basic4Cseq DNASeq GenomicFiles
21 months ago koushik • 0
10 results • Page 1 of 1
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Comment: Question about filter by expression (filterByExpr) in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Meaning, something like the the below? filterByExpr (y)
Comment: Question about filter by expression (filterByExpr) in edgeR by Gordon Smyth 47k
You enter the whole design matrix to filterByExpr(). You don't choose.
Comment: Question about filter by expression (filterByExpr) in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth I have a follow up question, lets say If I am working with multivariable experiment (perform statistical analysis on each vari…
Comment: How to combine two DESeq2 objects (dds) for analysis by Luke • 0
thanks ATpoint
Comment: How to combine two DESeq2 objects (dds) for analysis by Luke • 0
thanks Tzu
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