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GenomicFiles
•
reset
2
votes
6
replies
1.2k
views
memory leak when subsampling BAM
GenomicFiles
ShortRead
Rsamtools
3.2 years ago
robmaz77
▴ 20
3
votes
3
replies
1.1k
views
Parallel reading of Vcfs using VcfStack/RangedVcfStack
GenomicFiles
BiocParallel
updated 6.8 years ago by
shepherl
3.8k • written 6.9 years ago by
m.van_iterson
▴ 20
4
votes
2
replies
1.3k
views
readGAlignmentPairs not working correctly when reading a bam file by chunks
rsamtools
genomicalignments
genomicfiles
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
jfiksel
▴ 30
1
vote
2
replies
739
views
The metadata from rowRanges is missing in the MAP function of GenomicFiles.
GenomicFiles
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
Qiang
▴ 80
2
votes
2
replies
2.5k
views
How to randomly sample BAM files
rsamtools
genomicalignments
genomicfiles
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
Welliton de Souza
▴ 70
3
votes
2
replies
1.1k
views
Passing multiple arguments (like mapply) to the MAP-function in GenomicFiles.
genomicfiles
reduceByRange
updated 6.6 years ago by
Valerie Obenchain
★ 6.8k • written 6.6 years ago by
maltethodberg
▴ 170
3
votes
2
replies
963
views
ranges input for GenomicFiles
genomicfiles
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
Qiang
▴ 80
1
vote
1
reply
1.4k
views
How to randomly sample bam files obtaining a subset of information (ex: binning locations)
genomicfiles
rsamtools
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
victoriaccorey
▴ 10
0
votes
0
replies
603
views
Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions
Basic4Cseq
DNASeq
GenomicFiles
2.8 years ago
koushik
• 0
0
votes
0
replies
977
views
[Bioc-devel] AnnotatioDbi Biostrings load order breaks GenomicFiles summary method
GO
Biostrings
rtracklayer
GenomicRanges
BiocParallel
GenomicFiles
9.6 years ago
Dan Tenenbaum
★ 8.2k
10 results • Page
1 of 1
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Replies
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
It is indeed better. Anyway, did you notice this part in the output from `str(ortologos_filtrados)`: `$Gene.ID : int 115709372 115716460 …
Votes
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
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