Showing : GenomicInteractions • reset
2
votes
5
replies
1.3k
views
plotCisTrans function in GenomicInteractions package
genomicinteractions
6.6 years ago sarvesh.nikumbh ▴ 10
0
votes
4
replies
1.1k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions gviz
updated 4.2 years ago by ▴ 140 • written 4.2 years ago by ▴ 30
5
votes
4
replies
2.5k
views
Plotting genomic interactions in Gviz
gviz genomicinteractions
8.0 years ago enricoferrero ▴ 660
0
votes
2
replies
1.2k
views
Visualizing 4c-seq as arc
genomicinteractions gviz interactionset
updated 5.4 years ago by ▴ 140 • written 5.4 years ago by • 0
0
votes
3
replies
1.4k
views
Gviz (GenomicInteractions) arc height and boundaries
GenomicInteractions Gviz
updated 5.0 years ago by ▴ 140 • written 5.0 years ago by ▴ 10
2
votes
3
replies
765
views
Export annotation from GenomicInteractions package
genomicInteractions annotation
updated 4.9 years ago by ▴ 140 • written 4.9 years ago by • 0
3
votes
5
replies
2.0k
views
GenomicInteractions package read in meta data file
GenomicInteractions
updated 8.3 years ago by ▴ 40 • written 8.3 years ago by ▴ 190
0
votes
2
replies
1.1k
views
GenomicInteractions read in bedpe error
genomicinteractions GRanges
updated 8.2 years ago by ▴ 140 • written 8.2 years ago by ▴ 190
0
votes
5
replies
1.0k
views
GenomicInteractions duplicate annotations
duplicate GenomicInteractions
3.9 years ago dogancan • 0
1
vote
7
replies
1.6k
views
problem recasting InteractionSet into a DGEList
diffHic GenomicInteractions edgeR HiC cooler
updated 3.7 years ago by ★ 28k • written 3.7 years ago by ▴ 30
1
vote
0
replies
395
views
subsetByOverlaps in GenomicInteractions object doesn't work properly?
InteractionSet subsetByOverlaps GenomicInteractions
9 months ago LaureTomas ▴ 10
0
votes
4
replies
793
views
duplicated interactions using package GenomicInteractions
GenomicInteractions
4.1 years ago chang.jiaming • 0
0
votes
0
replies
603
views
Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions Basic4Cseq DNASeq GenomicFiles
2.8 years ago koushik • 0
13 results • Page 1 of 1
Recent ...
Replies
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0
What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…
Comment: DESeq2 output used for PCA plot on R studio by ATpoint ★ 4.0k
> Increase variability for mutants: use larger subtractive modifiers I was thinking the same as swbarnes. You're doing some data munging h…
Comment: minfi::read.metharray.exp by Basti ▴ 780
This is indeed correct now !
Comment: get BM error by Fara • 0
Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529
Comment: get BM error by Mike Smith ★ 6.5k
Can you provide an example of the Ensemble IDs you're trying to convert?
Votes
Comment: get BM error
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Awards • All
Scholar to ATpoint ★ 4.0k
Popular Question to Gordon Smyth 50k
Popular Question to i.sudbery ▴ 40
Scholar to Michael Love 41k
Popular Question to shepherl 3.8k
Locations • All
Japan, 2 minutes ago
Vietnam, 4 minutes ago
Germany, 9 minutes ago
India, 10 minutes ago
Portugal, 11 minutes ago
Traffic: 808 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6