Bioconductor GenomicInteractions

Showing : GenomicInteractions • reset

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gviz genomicinteractions

8.0 years ago enricoferrero ▴ 660

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GenomicInteractions

updated 8.3 years ago by Malcolm Perry ▴ 40 • written 8.3 years ago by tangming2005 ▴ 190

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genomicInteractions annotation

updated 4.9 years ago by liz.ingsimmons ▴ 140 • written 4.9 years ago by ls760 • 0

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genomicinteractions

6.6 years ago sarvesh.nikumbh ▴ 10

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diffHic GenomicInteractions edgeR HiC cooler

updated 3.6 years ago by Aaron Lun ★ 28k • written 3.6 years ago by Marco Blanchette ▴ 30

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387

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InteractionSet subsetByOverlaps GenomicInteractions

9 months ago LaureTomas ▴ 10

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genomicinteractions GRanges

updated 8.2 years ago by liz.ingsimmons ▴ 140 • written 8.2 years ago by tangming2005 ▴ 190

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GenomicInteractions gviz

updated 4.2 years ago by liz.ingsimmons ▴ 140 • written 4.2 years ago by Marco Blanchette ▴ 30

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genomicinteractions gviz interactionset

updated 5.4 years ago by liz.ingsimmons ▴ 140 • written 5.4 years ago by ferbecneu • 0

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duplicate GenomicInteractions

3.9 years ago dogancan • 0

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601

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

2.8 years ago koushik • 0

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788

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GenomicInteractions

4.1 years ago chang.jiaming • 0

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GenomicInteractions Gviz

updated 4.9 years ago by liz.ingsimmons ▴ 140 • written 5.0 years ago by Nik dAK ▴ 10

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Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by sredemption • 0

Try library(enrichplot) dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you for your reply and I know there is another post similar to this you had mentioned this. How are the genes that I mentioned in the…

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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

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