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GenomicRange
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Need Help w/ Subset on GRangesList
GenomicRange
GenomicRanges
11 weeks ago • updated 10 weeks ago
mat149
▴ 70
0
votes
1
reply
728
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DeSeq2 and GenomicRange installation possible conflict with bioconductor version 3.16?
DESeq2
version3.16
installation
bioconductor
GenomicRange
updated 16 months ago by
James W. MacDonald
65k • written 16 months ago by
hong
• 0
1
vote
11
replies
893
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Finding genes with loss of Heterozygosity
genomicrange
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
AZ
▴ 30
5
votes
2
replies
540
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Intersecting two big dataframe
genomicrange
intersect
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
AZ
▴ 30
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Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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