Bioconductor GenomicRange

Showing : GenomicRange • reset

1

vote

11

replies

893

views

genomicrange

updated 4.0 years ago by Kevin Blighe ★ 3.9k • written 4.0 years ago by AZ ▴ 30

0

votes

1

reply

728

views

DESeq2 version3.16 installation bioconductor GenomicRange

updated 16 months ago by James W. MacDonald 65k • written 16 months ago by hong • 0

5

votes

2

replies

540

views

genomicrange intersect

updated 4.0 years ago by James W. MacDonald 65k • written 4.0 years ago by AZ ▴ 30

2

votes

1

reply

244

views

GenomicRange GenomicRanges

11 weeks ago • updated 10 weeks ago mat149 ▴ 70

4 results • Page 1 of 1

Recent ...

Replies

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …

Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Votes

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Awards • All

Popular Question to James W. MacDonald 65k