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Geoquery
•
reset
3
votes
23
replies
1.2k
views
GEOquery run into problem with Sys.setenv("VROOM_CONNECTION_SIZE")
GEOquery
VROOM
5 months ago
array chip
▴ 420
5
votes
7
replies
417
views
GEO series matrix empty
GEOquery
GEO
3 months ago • updated 12 weeks ago
gs.123
▴ 20
3
votes
2
replies
300
views
GEOquery returning NAs as probe names
GEOquery
updated 4 months ago by
Sean Davis
21k • written 4 months ago by
John
▴ 30
1
vote
1
reply
445
views
Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray
GEOquery
cancerdata
MicroarrayData
updated 8 months ago by
James W. MacDonald
60k • written 8 months ago by
Caitlin
▴ 50
1
vote
2
replies
460
views
GEO RNASeq data query
GEOquery
RNASeq
GEO
updated 5 months ago by
Sean Davis
21k • written 6 months ago by
20yx17
▴ 10
0
votes
2
replies
90
views
How to get colData with GEOquery to prepare for DEseq2
GEOquery
DEseq2
14 days ago
Yugang
• 0
1
vote
1
reply
232
views
unable to find an inherited method for function ‘Table’ for signature ‘"GSE"
GEOquery
updated 10 months ago by
Sean Davis
21k • written 10 months ago by
pedram_torabian
▴ 10
2
votes
3
replies
320
views
Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery
CancerData
limma
RCy3
CancerInSilico
updated 6 months ago by
Steve Lianoglou
13k • written 6 months ago by
Caitlin
▴ 50
6
votes
7
replies
686
views
GEOquery reading error on Windows.
GEOquery
GEO
Gene
updated 6 months ago by
James W. MacDonald
60k • written 6 months ago by
Caitlin
▴ 50
0
votes
1
reply
114
views
Error in downloading GEO Supplementary files
GEOquery
updated 9 weeks ago by
tcalvo
▴ 70 • written 9 weeks ago by
wasilewska.karolina
• 0
0
votes
1
reply
492
views
Data frame with 0 columns and 0 rows
GEOquery
updated 6 months ago by
Basti
▴ 300 • written 6 months ago by
墨
• 0
7
votes
3
replies
4.0k
views
Tutorial:
Accessing Public Genomic Data from Bioconductor
geoquery
geometadb
sradb
Tutorial
7.0 years ago • updated 10 months ago
Sean Davis
21k
0
votes
1
reply
304
views
GEOquery
GEOquery
updated 12 months ago by
Basti
▴ 300 • written 12 months ago by
curiousmind007
• 0
13 results • Page
1 of 1
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Comment: edgeR : results from goana and kegga functions show opposite sig. p-value
by
sharvari gujja
▴ 30
Thank you so much!
Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha
by
Hervé Pagès
15k
Hi Jiping, Sorry for the slow response and thanks for providing those details. They allowed me to reproduce the problem and to come up wit…
Answer: Trouble with detecting AS events using ASpediaFI
by
rbqlsrbqls56
• 0
Assuming you downloaded "Homo_sapiens.GRCh38.104.gtf" from the Ensembl website, the gene model contains reference chromosomes (chr1-22, X, …
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
by
James W. MacDonald
60k
It is not a valid assumption that a GO term and a KEGG term that appear to be the same are actually the same. ``` > library(org.Hs.eg.d…
Comment: help please!
by
shepherl
3.1k
what is the result of `.libPaths()` and `"AnnotationDbi" %in% rownames(installed.packages())`
Votes
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.
DESeq2: likelihood ratio test interpretation, multifactor
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
Answer: GDCprepare of RNAseq counts produces error
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