Bioconductor Glimma

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475

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limma edgeR Glimma

updated 15 months ago by Gordon Smyth 50k • written 16 months ago by Mohammad • 0

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1.3k

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Glimma BiocStyle

updated 21 months ago by Mike Smith ★ 6.5k • written 21 months ago by neilzhao ▴ 30

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520

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limma Glimma RNASeq DESeq2

2.3 years ago Jonas • 0

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1.1k

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Glimma RNASeq

2.3 years ago Jonas • 0

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918

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Glimma

updated 2.1 years ago by Shian Su ▴ 40 • written 2.9 years ago by Jenny Drnevich ★ 2.0k

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984

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glimma software error

updated 4.7 years ago by Gordon Smyth 50k • written 4.7 years ago by Sam ▴ 10

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1.5k

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glimma

6.1 years ago omran.allatif • 0

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826

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glimma

updated 6.1 years ago by Shian Su ▴ 40 • written 6.1 years ago by gil.hornung • 0

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1.4k

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Glimma R markdown rnaseq

6.2 years ago Aurora ▴ 20

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1.0k

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Glimma

7.8 years ago Jenny Drnevich ★ 2.0k

10 results • Page 1 of 1

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Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Answer: List of Deprecated Packages for Bioc3.19 by shepherl 3.8k

singleCellTK has been fixed and will remain in Bioconductor

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…

Votes

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Answer: Cannabis OrgDb

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